AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-10-1
medoid: GCA 900112995 1
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AAI clade 1-10-2
medoid: GCA 000403215 2
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AAI clade 1-10-3
medoid: GCA 017411305 1
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AAI clade 1-10-4
medoid: GCA 002448395 1
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AAI clade 1-10-5
medoid: GCA 900772845 1
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AAI clade 1-10-6
medoid: GCF 002007235 1
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AAI clade 1-10-7
medoid: GCA 017940415 1
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AAI clade 1-10-8
medoid: GCF 000424305 1
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AAI clade 1-10-8-1
medoid: GCF 010906925 1
7 datasets: GCA 002309345 1 (AAI: 73.5%), GCA 017557435 1 (AAI: 93.54%), GCA 017557715 1 (AAI: 74.56%), GCF 008935055 1 (AAI: 82.12%), GCF 010906925 1 (AAI: 100.0%), GCF 900104335 1 (AAI: 82.3%), and GCF 900141825 1 (AAI: 82.69%)
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AAI clade 1-10-8-2
medoid: GCA 900317825 1
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AAI clade 1-10-8-3
medoid: GCF 000424305 1
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AAI clade 1-10-8-4
medoid: GCA 902779355 1
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AAI clade 1-10-8-5
medoid: GCA 017470735 1
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AAI clade 1-10-8-6
medoid: GCA 017626625 1
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AAI clade 1-10-8-7
medoid: GCA 017634455 1
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AAI clade 1-10-8-8
medoid: GCA 017994075 1
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AAI clade 1-10-8-9
medoid: GCA 902803645 1
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AAI clade 1-10-8-10
medoid: GCA 900116395 1
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AAI clade 1-10-8-11
medoid: GCA 900316395 1
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AAI clade 1-10-8-12
medoid: GCA 900316625 1
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AAI clade 1-10-8-13
medoid: GCA 900316665 1
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AAI clade 1-10-8-14
medoid: GCA 900317915 1
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AAI clade 1-10-8-15
medoid: GCA 900548205 1
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AAI clade 1-10-8-16
medoid: GCA 900552085 1
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AAI clade 1-10-8-17
medoid: GCA 900761925 1
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AAI clade 1-10-8-18
medoid: GCA 902797565 1
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AAI clade 1-10-8-19
medoid: GCA 905233835 1
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AAI clade 1-10-8-20
medoid: GCA 905236295 1
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AAI clade 1-10-8-21
medoid: GCA 905236585 1
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AAI clade 1-10-8-22
medoid: GCF 000160115 1
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AAI clade 1-10-8-1
medoid: GCF 010906925 1
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AAI clade 1-10-9
medoid: GCA 910584725 1
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AAI clade 1-10-10
medoid: GCA 017538995 1
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AAI clade 1-10-11
medoid: GCF 900108105 1
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AAI clade 1-10-1
medoid: GCA 900112995 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1