AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-10-1
medoid: GCA 900112995 1
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AAI clade 1-10-2
medoid: GCA 000403215 2
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AAI clade 1-10-3
medoid: GCA 017411305 1
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AAI clade 1-10-4
medoid: GCA 002448395 1
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AAI clade 1-10-5
medoid: GCA 900772845 1
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AAI clade 1-10-5-1
medoid: GCA 002432425 1
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AAI clade 1-10-5-2
medoid: GCA 015056915 1
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AAI clade 1-10-5-2-1
medoid: GCA 002314715 1
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AAI clade 1-10-5-2-2
medoid: GCA 015056915 1
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AAI clade 1-10-5-2-2-1
medoid: GCA 015056915 1
6 datasets: GCA 009177215 1 (AAI: 67.81%), GCA 015056915 1 (AAI: 100.0%), GCA 015056975 1 (AAI: 70.77%), GCA 015057005 1 (AAI: 70.11%), GCA 017624835 1 (AAI: 71.72%), and GCA 019114005 1 (AAI: 66.26%)
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AAI clade 1-10-5-2-2-2
medoid: GCA 016293615 1
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AAI clade 1-10-5-2-2-3
medoid: GCA 017513625 1
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AAI clade 1-10-5-2-2-4
medoid: GCA 017621075 1
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AAI clade 1-10-5-2-2-5
medoid: GCA 910589655 1
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AAI clade 1-10-5-2-2-1
medoid: GCA 015056915 1
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AAI clade 1-10-5-2-3
medoid: GCA 014804185 1
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AAI clade 1-10-5-2-4
medoid: GCA 015056865 1
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AAI clade 1-10-5-2-5
medoid: GCA 017520425 1
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AAI clade 1-10-5-2-6
medoid: GCA 017483735 1
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AAI clade 1-10-5-2-7
medoid: GCA 900755865 1
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AAI clade 1-10-5-2-8
medoid: GCA 904501885 1
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AAI clade 1-10-5-2-1
medoid: GCA 002314715 1
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AAI clade 1-10-5-3
medoid: GCA 002329385 1
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AAI clade 1-10-5-4
medoid: GCA 017476665 1
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AAI clade 1-10-5-5
medoid: GCA 017469945 1
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AAI clade 1-10-5-6
medoid: GCA 017624085 1
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AAI clade 1-10-5-7
medoid: GCA 003584705 1
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AAI clade 1-10-5-8
medoid: GCA 910586775 1
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AAI clade 1-10-5-9
medoid: GCA 014804645 1
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AAI clade 1-10-5-10
medoid: GCA 910577105 1
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AAI clade 1-10-5-11
medoid: GCA 015056795 1
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AAI clade 1-10-5-12
medoid: GCA 017465845 1
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AAI clade 1-10-5-13
medoid: GCA 019114305 1
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AAI clade 1-10-5-14
medoid: GCA 910586485 1
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AAI clade 1-10-5-15
medoid: GCA 910585615 1
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AAI clade 1-10-5-1
medoid: GCA 002432425 1
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AAI clade 1-10-6
medoid: GCF 002007235 1
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AAI clade 1-10-7
medoid: GCA 017940415 1
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AAI clade 1-10-8
medoid: GCF 000424305 1
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AAI clade 1-10-9
medoid: GCA 910584725 1
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AAI clade 1-10-10
medoid: GCA 017538995 1
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AAI clade 1-10-11
medoid: GCF 900108105 1
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AAI clade 1-10-1
medoid: GCA 900112995 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1