AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
    • AAI clade 9-1 medoid: Bifidobacterium cebidarum GCF 009193305 1
    • AAI clade 9-2 medoid: Actinomyces naeslundii GCF 031296655 1
      • AAI clade 9-2-1 medoid: Mobiluncus porci GCF 009695935 1
      • AAI clade 9-2-2 medoid: Actinomyces oris GCF 006546825 1
      • AAI clade 9-2-3 medoid: Actinomyces marmotae GCF 009829655 1
      • AAI clade 9-2-4 medoid: Actinomyces faecalis GCF 013184985 2
      • AAI clade 9-2-5 medoid: Pauljensenia hongkongensis GCF 001746855 1
      • AAI clade 9-2-6 medoid: Actinomyces capricornis GCF 019974135 1
      • AAI clade 9-2-7 medoid: Corynebacterium otitidis ATCC 51513 GCF 000296405 1
      • AAI clade 9-2-8 medoid: Schaalia odontolytica GCF 031191545 1
      • AAI clade 9-2-9 medoid: Actinomyces bovis GCF 900444995 1
      • AAI clade 9-2-10 medoid: Actinomyces massiliensis 4401292 GCF 000269805 1
      • AAI clade 9-2-11 medoid: Actinomyces radicidentis GCF 001553565 1
      • AAI clade 9-2-12 medoid: Actinomyces wuliandei GCF 004010955 1
      • AAI clade 9-2-13 medoid: Schaalia hyovaginalis GCF 014208035 1
      • AAI clade 9-2-14 medoid: Actinomyces minihominis GCF 900187855 1
      • AAI clade 9-2-15 medoid: Actinomyces provencensis GCF 900155435 1
      • AAI clade 9-2-16 medoid: Actinomyces succiniciruminis GCF 900002405 1
      • AAI clade 9-2-17 medoid: Actinomyces urinae GCF 900119695 1
      • AAI clade 9-2-18 medoid: Boudabousia tangfeifanii GCF 001856685 1
      • AAI clade 9-2-19 medoid: Nanchangia anserum GCF 015240065 1
        1 dataset: Nanchangia anserum GCF 015240065 1 (AAI: 100.0%)
      • AAI clade 9-2-20 medoid: Scrofimicrobium canadense GCF 009696615 1
      • AAI clade 9-2-21 medoid: Varibaculum massiliense GCF 900106855 1
      • AAI clade 9-2-22 medoid: Winkia neuii subsp. neuii DSM 8576 GCF 000420405 1
    • AAI clade 9-3 medoid: Arcanobacterium bovis GCF 004331995 1
    • AAI clade 9-4 medoid: Cellulosimicrobium cellulans GCF 006539945 1
    • AAI clade 9-5 medoid: Olsenella timonensis GCF 900119915 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1