AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 8-1
medoid: Sporomusa acidovorans DSM 3132 GCF 002257695 1
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AAI clade 8-2
medoid: Borreliella burgdorferi GCF 002151505 1
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AAI clade 8-3
medoid: Eggerthella lenta GCF 003339975 1
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AAI clade 8-4
medoid: Clostridium carboxidivorans P7 GCF 001038625 1
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AAI clade 8-5
medoid: Geomonas fuzhouensis GCF 020179575 1
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AAI clade 8-5-1
medoid: Desulfatibacillum aliphaticivorans DSM 15576 GCF 000429905 1
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AAI clade 8-5-2
medoid: Desulfobacter hydrogenophilus GCF 003261095 1
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AAI clade 8-5-3
medoid: Desulfuromonas versatilis GCF 019704135 1
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AAI clade 8-5-3-1
medoid: Desulfuromonas versatilis GCF 019704135 1
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AAI clade 8-5-3-2
medoid: Geoalkalibacter halelectricus GCF 025263685 1
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AAI clade 8-5-3-3
medoid: Desulfobulbus oralis GCF 002952055 1
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AAI clade 8-5-3-4
medoid: Desulfomarina profundi GCF 019703855 1
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AAI clade 8-5-3-5
medoid: Desulfurispira natronophila GCF 014203025 1
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AAI clade 8-5-3-6
medoid: Pelobacter seleniigenes DSM 18267 GCF 000711225 1
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AAI clade 8-5-3-7
medoid: Dissulfurimicrobium hydrothermale GCF 022026155 1
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AAI clade 8-5-3-8
medoid: Gemmatimonas groenlandica GCF 013004105 1
2 datasets: Gemmatimonas groenlandica GCF 013004105 1 (AAI: 100.0%) and Gemmatimonas phototrophica GCF 000695095 2 (AAI: 65.77%)
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AAI clade 8-5-3-9
medoid: Nitrospina gracilis 3 211 GCF 000341545 2
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AAI clade 8-5-3-10
medoid: Sulfidibacter corallicola GCF 017498545 1
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AAI clade 8-5-3-11
medoid: Syntrophotalea carbinolica DSM 2380 GCF 000012885 1
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AAI clade 8-5-3-12
medoid: Syntrophus gentianae GCF 900109885 1
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AAI clade 8-5-3-1
medoid: Desulfuromonas versatilis GCF 019704135 1
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AAI clade 8-5-4
medoid: Edaphobacter dinghuensis GCF 014640335 1
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AAI clade 8-5-5
medoid: Geobacter hydrogenophilus GCF 018501225 1
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AAI clade 8-5-6
medoid: Geomonas anaerohicana GCF 016458305 1
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AAI clade 8-5-7
medoid: Deferribacter desulfuricans SSM1 GCF 000010985 1
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AAI clade 8-5-8
medoid: Alloacidobacterium dinghuense GCF 014274465 1
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AAI clade 8-5-9
medoid: Desulfovibrio inopinatus DSM 10711 GCF 000429305 1
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AAI clade 8-5-10
medoid: Leptospira terpstrae serovar Hualin str. LT 11 33 ATCC 700639 GCF 000332495 1
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AAI clade 8-5-1
medoid: Desulfatibacillum aliphaticivorans DSM 15576 GCF 000429905 1
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AAI clade 8-6
medoid: Fusobacterium polymorphum GCF 035320945 1
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AAI clade 8-7
medoid: Argonema antarcticum A004 B2 GCF 023333585 1
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AAI clade 8-1
medoid: Sporomusa acidovorans DSM 3132 GCF 002257695 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1