AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
    • AAI clade 7-1 medoid: Deinococcus soli ex Cha et al 2016 GCF 001007995 1
    • AAI clade 7-2 medoid: Desulfofundulus thermosubterraneus DSM 16057 GCF 900142025 1
    • AAI clade 7-3 medoid: Thermosipho africanus Ob7 GCF 003351105 1
    • AAI clade 7-4 medoid: Thermus scotoductus DSM 8553 GCF 000381045 1
      • AAI clade 7-4-1 medoid: Thermus thermophilus HB8 GCF 000091545 1
      • AAI clade 7-4-2 medoid: Oceanithermus desulfurans GCF 014201675 1
      • AAI clade 7-4-3 medoid: Thermus scotoductus DSM 8553 GCF 000381045 1
      • AAI clade 7-4-4 medoid: Thermus arciformis GCF 022556335 1
      • AAI clade 7-4-5 medoid: Marinithermus hydrothermalis DSM 14884 GCF 000195335 1
      • AAI clade 7-4-6 medoid: Thermus altitudinis GCF 022760835 1
      • AAI clade 7-4-7 medoid: Thermus sediminis GCF 003426945 1
      • AAI clade 7-4-8 medoid: Thermus composti GCF 014647535 1
      • AAI clade 7-4-9 medoid: Thermus filiformis GCF 000771745 2
      • AAI clade 7-4-10 medoid: Thermus thalpophilus GCF 022760915 1
      • AAI clade 7-4-11 medoid: Thermus islandicus DSM 21543 GCF 000421625 1
      • AAI clade 7-4-12 medoid: Thermus oshimai DSM 12092 GCF 000373145 1
      • AAI clade 7-4-13 medoid: Thermus thermamylovorans GCF 004307015 1
        1 dataset: Thermus thermamylovorans GCF 004307015 1 (AAI: 100.0%)
    • AAI clade 7-5 medoid: Candidatus Palauibacter rhopaloidicola GCA 026914155 1
    • AAI clade 7-6 medoid: Thermanaerovibrio velox DSM 12556 GCF 000237825 1
    • AAI clade 7-7 medoid: Bellilinea caldifistulae GCF 001050215 2
    • AAI clade 7-8 medoid: Stieleria neptunia GCF 007754155 1
    • AAI clade 7-9 medoid: Meiothermus ruber DSM 1279 GCF 000024425 1
    • AAI clade 7-10 medoid: Nostoc favosum CHAB5714 GCF 020829495 1
    • AAI clade 7-11 medoid: Desulfacinum infernum DSM 9756 GCF 900129305 1
    • AAI clade 7-12 medoid: Polyangium fumosum GCF 005144585 1
    • AAI clade 7-13 medoid: Rubrobacter naiadicus GCF 028617085 1
    • AAI clade 7-14 medoid: Paludisphaera mucosa GCF 029589435 1
    • AAI clade 7-15 medoid: Herpetosiphon giganteus GCF 016907925 1
    • AAI clade 7-16 medoid: Thermogemmatispora tikiterensis GCF 003268475 1
    • AAI clade 7-17 medoid: Rhodothermus marinus DSM 4252 GCF 000024845 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1