AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 7-1
medoid: Deinococcus soli ex Cha et al 2016 GCF 001007995 1
-
AAI clade 7-2
medoid: Desulfofundulus thermosubterraneus DSM 16057 GCF 900142025 1
-
AAI clade 7-2-1
medoid: Moorella mulderi DSM 14980 GCF 001594015 1
-
AAI clade 7-2-2
medoid: Carboxydothermus ferrireducens DSM 11255 GCF 013409775 1
-
AAI clade 7-2-3
medoid: Pyrinomonas methylaliphatogenes GCF 000820845 2
-
AAI clade 7-2-4
medoid: Dehalogenimonas etheniformans GCF 002878295 2
-
AAI clade 7-2-5
medoid: Desulfofundulus salinum GCF 003627965 1
-
AAI clade 7-2-6
medoid: Thermacetogenium phaeum DSM 12270 GCF 000305935 1
-
AAI clade 7-2-7
medoid: Sulfobacillus thermosulfidooxidans DSM 9293 GCF 900176145 1
-
AAI clade 7-2-8
medoid: Abditibacterium utsteinense GCF 002973605 1
-
AAI clade 7-2-9
medoid: Ammonifex degensii KC4 GCF 000024605 1
-
AAI clade 7-2-10
medoid: Fervidicola ferrireducens GCF 001562425 1
-
AAI clade 7-2-11
medoid: Symbiobacterium terraclitae GCF 017874315 1
-
AAI clade 7-2-12
medoid: Candidatus Hebobacterum abditum GCA 029821875 1
-
AAI clade 7-2-13
medoid: Candidatus Zipacnadum vermilionense GCA 029821755 1
-
AAI clade 7-2-14
medoid: Chlamydia pecorum E58 GCF 000204135 1
-
AAI clade 7-2-15
medoid: Chthonomonas calidirosea T49 GCF 000427095 1
-
AAI clade 7-2-16
medoid: Coprothermobacter platensis DSM 11748 GCF 000378005 1
-
AAI clade 7-2-17
medoid: Dictyoglomus thermophilum H 6 12 GCF 000020965 1
-
AAI clade 7-2-18
medoid: Leptonema illini DSM 21528 GCF 000243335 1
-
AAI clade 7-2-19
medoid: Tepidiforma bonchosmolovskayae GCF 008838325 1
-
AAI clade 7-2-20
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
2 datasets: Thermaerobacter marianensis DSM 12885 GCF 000184705 1 (AAI: 100.0%) and Thermaerobacter subterraneus DSM 13965 GCF 000183545 2 (AAI: 73.1%)
-
AAI clade 7-2-21
medoid: Vulcanimicrobium alpinum GCF 027923555 1
-
AAI clade 7-2-22
medoid: Candidatus Dormibacter inghamiae GCA 016464725 1
-
AAI clade 7-2-1
medoid: Moorella mulderi DSM 14980 GCF 001594015 1
-
AAI clade 7-3
medoid: Thermosipho africanus Ob7 GCF 003351105 1
-
AAI clade 7-4
medoid: Thermus scotoductus DSM 8553 GCF 000381045 1
-
AAI clade 7-5
medoid: Candidatus Palauibacter rhopaloidicola GCA 026914155 1
-
AAI clade 7-6
medoid: Thermanaerovibrio velox DSM 12556 GCF 000237825 1
-
AAI clade 7-7
medoid: Bellilinea caldifistulae GCF 001050215 2
-
AAI clade 7-8
medoid: Stieleria neptunia GCF 007754155 1
-
AAI clade 7-9
medoid: Meiothermus ruber DSM 1279 GCF 000024425 1
-
AAI clade 7-10
medoid: Nostoc favosum CHAB5714 GCF 020829495 1
-
AAI clade 7-11
medoid: Desulfacinum infernum DSM 9756 GCF 900129305 1
-
AAI clade 7-12
medoid: Polyangium fumosum GCF 005144585 1
-
AAI clade 7-13
medoid: Rubrobacter naiadicus GCF 028617085 1
-
AAI clade 7-14
medoid: Paludisphaera mucosa GCF 029589435 1
-
AAI clade 7-15
medoid: Herpetosiphon giganteus GCF 016907925 1
-
AAI clade 7-16
medoid: Thermogemmatispora tikiterensis GCF 003268475 1
-
AAI clade 7-17
medoid: Rhodothermus marinus DSM 4252 GCF 000024845 1
-
AAI clade 7-1
medoid: Deinococcus soli ex Cha et al 2016 GCF 001007995 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1