AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 7-1
medoid: Deinococcus soli ex Cha et al 2016 GCF 001007995 1
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AAI clade 7-2
medoid: Desulfofundulus thermosubterraneus DSM 16057 GCF 900142025 1
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AAI clade 7-3
medoid: Thermosipho africanus Ob7 GCF 003351105 1
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AAI clade 7-4
medoid: Thermus scotoductus DSM 8553 GCF 000381045 1
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AAI clade 7-5
medoid: Candidatus Palauibacter rhopaloidicola GCA 026914155 1
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AAI clade 7-6
medoid: Thermanaerovibrio velox DSM 12556 GCF 000237825 1
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AAI clade 7-7
medoid: Bellilinea caldifistulae GCF 001050215 2
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AAI clade 7-8
medoid: Stieleria neptunia GCF 007754155 1
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AAI clade 7-9
medoid: Meiothermus ruber DSM 1279 GCF 000024425 1
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AAI clade 7-10
medoid: Nostoc favosum CHAB5714 GCF 020829495 1
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AAI clade 7-11
medoid: Desulfacinum infernum DSM 9756 GCF 900129305 1
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AAI clade 7-11-1
medoid: Desulfacinum infernum DSM 9756 GCF 900129305 1
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AAI clade 7-11-2
medoid: Thermodesulfovibrio islandicus DSM 12570 GCF 000482825 1
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AAI clade 7-11-3
medoid: Thermodesulfatator autotrophicus GCF 001642325 1
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AAI clade 7-11-4
medoid: Candidatus Nitrospira neomarina GCF 032051675 1
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AAI clade 7-11-5
medoid: Spirochaeta thermophila DSM 6578 GCF 000184345 1
1 dataset: Spirochaeta thermophila DSM 6578 GCF 000184345 1 (AAI: 100.0%)
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AAI clade 7-11-6
medoid: Thermoanaerobaculum aquaticum GCF 000687145 1
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AAI clade 7-11-7
medoid: Sulfuritelmatomonas gaucii asm GCA 900290245 1
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AAI clade 7-11-8
medoid: Bipolaricaulis anaerobius asm GCA 900465355 1
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AAI clade 7-11-1
medoid: Desulfacinum infernum DSM 9756 GCF 900129305 1
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AAI clade 7-12
medoid: Polyangium fumosum GCF 005144585 1
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AAI clade 7-13
medoid: Rubrobacter naiadicus GCF 028617085 1
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AAI clade 7-14
medoid: Paludisphaera mucosa GCF 029589435 1
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AAI clade 7-15
medoid: Herpetosiphon giganteus GCF 016907925 1
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AAI clade 7-16
medoid: Thermogemmatispora tikiterensis GCF 003268475 1
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AAI clade 7-17
medoid: Rhodothermus marinus DSM 4252 GCF 000024845 1
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AAI clade 7-1
medoid: Deinococcus soli ex Cha et al 2016 GCF 001007995 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1