AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
    • AAI clade 5-1 medoid: Lactobacillus gallinarum DSM 10532 JCM 2011 GCF 001434975 1
    • AAI clade 5-2 medoid: Lactococcus petauri GCF 002154895 1
      • AAI clade 5-2-1 medoid: Lactococcus cremoris GCF 001622295 1
      • AAI clade 5-2-2 medoid: Lactococcus petauri GCF 002154895 1
      • AAI clade 5-2-3 medoid: Lactococcus allomyrinae GCF 003627095 1
      • AAI clade 5-2-4 medoid: Lactovum miscens GCF 014202895 1
        1 dataset: Lactovum miscens GCF 014202895 1 (AAI: 100.0%)
    • AAI clade 5-3 medoid: Streptococcus chosunense GCF 003626515 1
    • AAI clade 5-4 medoid: Leuconostoc gelidum subsp. aenigmaticum GCF 020089505 1
    • AAI clade 5-5 medoid: Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 JCM 1149 CGMCC 1 2437 GCF 001434175 1
    • AAI clade 5-6 medoid: Lacticaseibacillus casei DSM 20011 JCM 1134 ATCC 393 GCF 000829055 1
    • AAI clade 5-7 medoid: Enterococcus faecium GCF 900447735 1
    • AAI clade 5-8 medoid: Enterococcus haemoperoxidus ATCC BAA 382 GCF 000407165 1
    • AAI clade 5-9 medoid: Apilactobacillus waqarii GCF 019061205 1
    • AAI clade 5-10 medoid: Limosilactobacillus balticus GCF 014145615 1
    • AAI clade 5-11 medoid: Streptococcus vicugnae GCF 016461705 1
    • AAI clade 5-12 medoid: Lactobacillus isalae GCF 947539375 1
    • AAI clade 5-13 medoid: Trichococcus paludicola GCF 003052295 1
    • AAI clade 5-14 medoid: Lentilactobacillus buchneri DSM 20057 GCF 001434735 1
    • AAI clade 5-15 medoid: Weissella confusa GCF 001436895 1
    • AAI clade 5-16 medoid: Aerococcus mictus GCF 003286595 3
    • AAI clade 5-17 medoid: Companilactobacillus zhachilii GCF 003606365 2
    • AAI clade 5-18 medoid: Enterococcus hulanensis GCF 005405485 1
    • AAI clade 5-19 medoid: Liquorilactobacillus mali GCF 001437155 1
    • AAI clade 5-20 medoid: Fructobacillus tropaeoli GCF 001047135 2
    • AAI clade 5-21 medoid: Lactococcus laudensis GCF 013449735 1
    • AAI clade 5-22 medoid: Levilactobacillus mulengensis GCF 003946045 1
    • AAI clade 5-23 medoid: Alkalibacterium putridalgicola GCF 007988845 1
    • AAI clade 5-24 medoid: Secundilactobacillus silagincola GCF 002583405 1
    • AAI clade 5-25 medoid: Leptospira selangorensis GCF 004769405 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1