AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 31-1
medoid: Candidatus Amphrikana amoebophyrae GCA 030408475 1
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AAI clade 31-2
medoid: Edaphobacter acidisoli GCF 014642855 1
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AAI clade 31-3
medoid: Frateuria soli GCF 021117385 1
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AAI clade 31-4
medoid: Luteimonas colneyensis GCF 014836665 1
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AAI clade 31-5
medoid: Lysobacter dokdonensis DS 58 GCF 000770795 1
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AAI clade 31-6
medoid: Lysobacter luteus GCF 907164845 1
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AAI clade 31-7
medoid: Oleiagrimonas soli GCF 000761445 1
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AAI clade 31-8
medoid: Pseudodesulfovibrio mercurii GCF 000189295 2
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AAI clade 31-9
medoid: Thermomonas haemolytica GCF 004346265 1
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AAI clade 31-10
medoid: Lysobacter soli GCF 003382285 1
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AAI clade 31-10-1
medoid: Lysobacter soli GCF 003382285 1
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AAI clade 31-10-1-1
medoid: Lysobacter soli GCF 003382285 1
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AAI clade 31-10-1-1-1
medoid: Vulcaniibacterium tengchongense GCF 003814555 1
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AAI clade 31-10-1-1-2
medoid: Lysobacter arenosi GCF 016613475 2
1 dataset: Lysobacter arenosi GCF 016613475 2 (AAI: 100.0%)
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AAI clade 31-10-1-1-3
medoid: Lysobacter soli GCF 003382285 1
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AAI clade 31-10-1-1-4
medoid: Lysobacter niastensis GCF 015453285 1
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AAI clade 31-10-1-1-5
medoid: Lysobacter tabacisoli GCF 003586305 1
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AAI clade 31-10-1-1-1
medoid: Vulcaniibacterium tengchongense GCF 003814555 1
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AAI clade 31-10-1-2
medoid: Vulcaniibacterium thermophilum GCF 007923255 1
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AAI clade 31-10-1-3
medoid: Coralloluteibacterium stylophorae GCF 018122625 2
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AAI clade 31-10-1-4
medoid: Lysobacter bugurensis GCF 014652095 1
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AAI clade 31-10-1-5
medoid: Lysobacter solisilvae GCF 016613535 2
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AAI clade 31-10-1-1
medoid: Lysobacter soli GCF 003382285 1
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AAI clade 31-10-2
medoid: Lysobacter daejeonensis GH1 9 GCF 000768355 1
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AAI clade 31-10-1
medoid: Lysobacter soli GCF 003382285 1
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AAI clade 31-11
medoid: Wenzhouxiangella marina GCF 001187785 1
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AAI clade 31-12
medoid: Arenimonas donghaensis DSM 18148 HO3 R19 GCF 000743535 1
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AAI clade 31-13
medoid: Desulfomicrobium orale DSM 12838 GCF 001553625 1
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AAI clade 31-14
medoid: Nitratidesulfovibrio liaohensis GCF 011682075 1
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AAI clade 31-15
medoid: Salidesulfovibrio brasiliensis JCM 12178 GCF 001311825 1
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AAI clade 31-16
medoid: Dokdonella fugitiva GCF 004342425 1
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AAI clade 31-17
medoid: Estrella lausannensis GCF 900000175 1
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AAI clade 31-18
medoid: Silvanigrella paludirubra GCF 009208775 1
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AAI clade 31-19
medoid: Luteimonas endophytica GCF 029887875 1
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AAI clade 31-20
medoid: Luteimonas viscosa GCF 008244685 1
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AAI clade 31-21
medoid: Luteimonas galliterrae GCF 023374055 1
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AAI clade 31-22
medoid: Luteimonas chenhongjianii GCF 002327105 1
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AAI clade 31-23
medoid: Lysobacter sedimenti GCF 022808325 1
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AAI clade 31-24
medoid: Lysobacter spongiae GCF 014145325 1
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AAI clade 31-25
medoid: Lysobacter avium GCF 015209745 1
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AAI clade 31-26
medoid: Lysobacter antibioticus GCF 001442535 1
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AAI clade 31-27
medoid: Lysobacter segetis GCF 004359965 1
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AAI clade 31-28
medoid: Lysobacter oculi GCF 003293695 1
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AAI clade 31-29
medoid: Marinicella gelatinilytica GCF 026410405 1
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AAI clade 31-30
medoid: Marinicella sediminis GCF 002000055 1
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AAI clade 31-31
medoid: Marinihelvus fidelis GCF 008725655 1
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AAI clade 31-32
medoid: Rhodanobacter denitrificans GCF 000230695 2
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AAI clade 31-1
medoid: Candidatus Amphrikana amoebophyrae GCA 030408475 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1