AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 30-1
medoid: Glycocaulis alkaliphilus GCF 004000605 1
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AAI clade 30-2
medoid: Asticcacaulis excentricus CB 48 GCF 000175215 2
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AAI clade 30-3
medoid: Phenylobacterium zucineum HLK1 GCF 000017265 1
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AAI clade 30-4
medoid: Brevundimonas guildfordensis GCF 014836405 1
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AAI clade 30-5
medoid: Brevundimonas vesicularis NBRC 12165 GCF 001592205 1
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AAI clade 30-5-1
medoid: Brevundimonas halotolerans GCF 003730275 1
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AAI clade 30-5-2
medoid: Brevundimonas fontaquae GCF 017086445 1
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AAI clade 30-5-2-1
medoid: Brevundimonas nasdae GCF 016654005 1
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AAI clade 30-5-2-2
medoid: Brevundimonas albigilva GCF 023503965 1
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AAI clade 30-5-2-3
medoid: Brevundimonas aurantiaca GCF 014199955 1
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AAI clade 30-5-2-4
medoid: Brevundimonas vesicularis NBRC 12165 GCF 001592205 1
4 datasets: Brevundimonas fontaquae GCF 017086445 1 (AAI: 97.12%), Brevundimonas huaxiensis GCF 014218725 1 (AAI: 95.8%), Brevundimonas vesicularis NBRC 12165 GCF 001592205 1 (AAI: 100.0%), and Brevundimonas colombiensis gb CP119326 1 (AAI: 82.62%)
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AAI clade 30-5-2-5
medoid: Brevundimonas intermedia GCF 027922165 1
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AAI clade 30-5-2-1
medoid: Brevundimonas nasdae GCF 016654005 1
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AAI clade 30-5-3
medoid: Brevundimonas alba GCF 011927945 1
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AAI clade 30-5-4
medoid: Brevundimonas subvibrioides ATCC 15264 GCF 000144605 1
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AAI clade 30-5-5
medoid: Brevundimonas lutea GCF 003704105 1
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AAI clade 30-5-1
medoid: Brevundimonas halotolerans GCF 003730275 1
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AAI clade 30-6
medoid: Caulobacter radicis GCF 003094615 1
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AAI clade 30-7
medoid: Henriciella algicola GCF 003576245 1
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AAI clade 30-8
medoid: Hyphomonas pacifica GCF 000682675 1
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AAI clade 30-9
medoid: Vitreimonas flagellata GCF 004634425 1
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AAI clade 30-10
medoid: Maricaulis virginensis GCF 027922185 1
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AAI clade 30-1
medoid: Glycocaulis alkaliphilus GCF 004000605 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1