AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 28-1 medoid: Akkermansia massiliensis GCF 023516715 1
  • AAI clade 28-2 medoid: Gimesia chilikensis GCF 008329715 1
  • AAI clade 28-3 medoid: Candidatus Protochlamydia phocaeensis GCF 001545115 1
  • AAI clade 28-4 medoid: Coraliomargarita parva GCF 027257905 1
  • AAI clade 28-5 medoid: Prosthecobacter fusiformis GCF 004364345 1
  • AAI clade 28-6 medoid: Methylacidiphilum caldifontis GCF 017310505 1
  • AAI clade 28-7 medoid: Rubritalea marina DSM 17716 GCF 000378105 1
  • AAI clade 28-8 medoid: Phycisphaera mikurensis GCF 014207395 1
  • AAI clade 28-9 medoid: Nibricoccus aquaticus GCF 002310495 1
    • AAI clade 28-9-1 medoid: Synoicihabitans lomoniglobus GCF 021555095 1
    • AAI clade 28-9-2 medoid: Termitidicoccus mucosus GCF 001650175 1
    • AAI clade 28-9-3 medoid: Opitutus terrae PB90 1 GCF 000019965 1
    • AAI clade 28-9-4 medoid: Lacunisphaera limnophila GCF 001746835 1
    • AAI clade 28-9-5 medoid: Rariglobus hedericola GCF 007559335 1
  • AAI clade 28-10 medoid: Rhodopirellula baltica SH 1 GCF 000196115 1
  • AAI clade 28-11 medoid: Pontiella desulfatans GCF 900890425 1
  • AAI clade 28-12 medoid: Cephaloticoccus capnophilus GCF 001580045 1
  • AAI clade 28-13 medoid: Fontisphaera persica GCF 024832785 1
  • AAI clade 28-14 medoid: Luteolibacter arcticus GCF 025950235 1
  • AAI clade 28-15 medoid: Lentisphaera marina GCF 028745505 1
  • AAI clade 28-16 medoid: Victivallis vadensis GCF 003096415 1
  • AAI clade 28-17 medoid: Pelagicoccus enzymogenes GCF 014803405 1
  • AAI clade 28-18 medoid: Rosistilla carotiformis GCF 007753095 1
  • AAI clade 28-19 medoid: Thalassoglobus neptunius GCF 007859735 1
  • AAI clade 28-20 medoid: Planctopirus limnophila DSM 3776 GCF 000092105 1
  • AAI clade 28-21 medoid: Roseibacillus ishigakijimensis GCF 016595415 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1