AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
    • AAI clade 26-1 medoid: Alteromonas gracilis GCF 002993325 1
    • AAI clade 26-2 medoid: Pseudidiomarina marina GCF 003987045 1
      • AAI clade 26-2-1 medoid: Aliidiomarina sedimenti GCF 003986955 1
        3 datasets: Aliidiomarina sedimenti GCF 003986955 1 (AAI: 100.0%), Aliidiomarina maris GCF 003987335 1 (AAI: 71.78%), and Aliidiomarina minuta GCF 003987145 1 (AAI: 68.85%)
      • AAI clade 26-2-2 medoid: Fangia hongkongensis FSC776 DSM 21703 GCF 000379445 1
      • AAI clade 26-2-3 medoid: Idiomarina zobellii GCF 001294745 1
      • AAI clade 26-2-4 medoid: Methylophaga aminisulfidivorans MP GCF 000214595 1
      • AAI clade 26-2-5 medoid: Gallaecimonas mangrovi GCF 003367375 1
      • AAI clade 26-2-6 medoid: Permianibacter aggregans GCF 004363125 1
      • AAI clade 26-2-7 medoid: Lujinxingia sediminis GCF 004005565 1
      • AAI clade 26-2-8 medoid: Pseudidiomarina marina GCF 003987045 1
      • AAI clade 26-2-9 medoid: Pseudidiomarina aquimaris GCF 003987395 1
      • AAI clade 26-2-10 medoid: Aliidiomarina indica GCF 015354615 1
      • AAI clade 26-2-11 medoid: Aliidiomarina iranensis GCF 003987135 1
      • AAI clade 26-2-12 medoid: Candidatus Comchoanobacter bicostacola GCF 024172705 1
      • AAI clade 26-2-13 medoid: Candidatus Synchoanobacter obligatus GCF 024259865 1
      • AAI clade 26-2-14 medoid: Cocleimonas flava GCF 004339015 1
      • AAI clade 26-2-15 medoid: Criblamydia sequanensis CRIB 18 GCF 000750955 1
      • AAI clade 26-2-16 medoid: Desulfocurvus vexinensis DSM 17965 GCF 000519125 1
      • AAI clade 26-2-17 medoid: Desulfonatronum lacustre DSM 10312 GCF 000519265 1
      • AAI clade 26-2-18 medoid: Geothrix paludis GCF 022808815 1
      • AAI clade 26-2-19 medoid: Kangiella taiwanensis GCF 020005165 1
      • AAI clade 26-2-20 medoid: Microvenator marinus GCF 007993755 1
      • AAI clade 26-2-21 medoid: Ostreibacterium oceani GCF 009362845 1
      • AAI clade 26-2-22 medoid: Simkania negevensis Z GCF 000237205 1
      • AAI clade 26-2-23 medoid: Thiocystis violacea GCF 016583575 1
      • AAI clade 26-2-24 medoid: Thiomicrorhabdus cannonii GCF 013391695 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1