AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
    • AAI clade 26-1 medoid: Alteromonas gracilis GCF 002993325 1
      • AAI clade 26-1-1 medoid: Shewanella ulleungensis GCF 014648315 1
      • AAI clade 26-1-2 medoid: Francisella marina GCF 008369785 1
      • AAI clade 26-1-3 medoid: Ferrimonas sediminum GCF 900100175 1
      • AAI clade 26-1-4 medoid: Allofrancisella inopinata GCF 004365555 1
      • AAI clade 26-1-5 medoid: Alteromonas oceani GCF 003731635 1
      • AAI clade 26-1-6 medoid: Candidatus Pseudothioglobus singularis PS1 GCF 001281385 1
      • AAI clade 26-1-7 medoid: Alteromonas flava GCF 002807685 1
      • AAI clade 26-1-8 medoid: Halodesulfovibrio spirochaetisodalis GCF 001672295 1
      • AAI clade 26-1-9 medoid: Ignatzschineria indica GCF 003121925 1
      • AAI clade 26-1-10 medoid: Kangiella aquimarina DSM 16071 GCF 000374105 1
      • AAI clade 26-1-11 medoid: Bowmanella yangjiangensis GCF 017255015 1
      • AAI clade 26-1-12 medoid: Neiella litorisoli GCF 014773395 1
      • AAI clade 26-1-13 medoid: Paraglaciecola mesophila KMM 241 GCF 000315015 1
      • AAI clade 26-1-14 medoid: Shewanella fodinae GCF 014651955 1
      • AAI clade 26-1-15 medoid: Catenovulum agarivorans YM01 GCF 000281085 1
      • AAI clade 26-1-16 medoid: Alteromonas abrolhosensis GCF 001953635 1
      • AAI clade 26-1-17 medoid: Alteromonas naphthalenivorans GCF 000213655 1
      • AAI clade 26-1-18 medoid: Salinimonas iocasae GCF 006228385 1
      • AAI clade 26-1-19 medoid: Arenicella xantha GCF 003315245 1
      • AAI clade 26-1-20 medoid: Desulfovibrio subterraneus GCF 013340285 1
      • AAI clade 26-1-21 medoid: Thiomicrospira aerophila AL3 GCF 000227665 2
    • AAI clade 26-2 medoid: Pseudidiomarina marina GCF 003987045 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1