AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 25-1
medoid: Erysipelothrix rhusiopathiae ATCC 19414 GCF 000160815 2
-
AAI clade 25-2
medoid: Spiroplasma mirum ATCC 29335 GCF 000517365 1
-
AAI clade 25-3
medoid: Allobaculum mucilyticum GCF 020969965 1
-
AAI clade 25-4
medoid: Amedibacterium intestinale GCF 010537335 1
-
AAI clade 25-5
medoid: Anaerolactibacter massiliensis GCF 900290205 1
-
AAI clade 25-6
medoid: Catenibacterium faecis GCF 014306455 1
-
AAI clade 25-7
medoid: Holdemanella hominis GCF 014306155 1
-
AAI clade 25-8
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 25-9
medoid: Holdemania filiformis DSM 12042 GCF 000157995 1
-
AAI clade 25-10
medoid: Breznakia pachnodae GCF 030814225 1
-
AAI clade 25-11
medoid: Dubosiella newyorkensis GCF 001945605 1
-
AAI clade 25-12
medoid: Erysipelothrix aquatica GCF 009828775 2
-
AAI clade 25-13
medoid: Mesomycoplasma flocculare ATCC 27399 GCF 000815065 1
-
AAI clade 25-14
medoid: Mycoplasma elephantis ATCC 51980 GCF 000687815 1
-
AAI clade 25-15
medoid: Mycoplasmopsis alligatoris A21JP2 GCF 000178375 1
-
AAI clade 25-16
medoid: Spiroplasma syrphidicola EA 1 GCF 000400955 1
2 datasets: Spiroplasma chrysopicola DF 1 GCF 000400935 1 (AAI: 86.53%) and Spiroplasma syrphidicola EA 1 GCF 000400955 1 (AAI: 100.0%)
-
AAI clade 25-17
medoid: Spiroplasma phoeniceum P40 GCF 003339775 1
-
AAI clade 25-1
medoid: Erysipelothrix rhusiopathiae ATCC 19414 GCF 000160815 2
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1