AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 23-1 medoid: Aliarcobacter cryaerophilus ATCC 43158 GCF 006165035 1
  • AAI clade 23-2 medoid: Campylobacter jejuni GCF 001457695 1
  • AAI clade 23-3 medoid: Helicobacter pylori GCF 003050665 1
  • AAI clade 23-4 medoid: Campylobacter pinnipediorum subsp. pinnipediorum GCF 002021925 1
  • AAI clade 23-5 medoid: Campylobacter hyointestinalis subsp. hyointestinalis GCF 013372145 1
  • AAI clade 23-6 medoid: Campylobacter lari subsp. concheus GCF 008245025 1
  • AAI clade 23-7 medoid: Helicobacter labetoulli GCF 003670275 1
  • AAI clade 23-8 medoid: Arcobacter aquimarinus GCF 004115795 1
  • AAI clade 23-9 medoid: Helicobacter salomonis GCF 017979425 1
  • AAI clade 23-10 medoid: Malaciobacter halophilus GCF 002837275 1
  • AAI clade 23-11 medoid: Arcobacter peruensis GCF 003711085 1
  • AAI clade 23-12 medoid: Caminibacter pacificus GCF 003752135 1
  • AAI clade 23-13 medoid: Campylobacter massiliensis GCF 014253065 1
  • AAI clade 23-14 medoid: Helicobacter bilis ATCC 51630 GCF 000686565 1
  • AAI clade 23-15 medoid: Helicobacter colisuis GCF 023646285 1
  • AAI clade 23-16 medoid: Helicobacter brantae GCF 003364205 1
    • AAI clade 23-16-1 medoid: Helicobacter canis GCF 008693005 1
    • AAI clade 23-16-2 medoid: Helicobacter anatolicus GCF 021300615 1
      1 dataset: Helicobacter anatolicus GCF 021300615 1 (AAI: 100.0%)
    • AAI clade 23-16-3 medoid: Helicobacter anseris GCF 003364335 1
    • AAI clade 23-16-4 medoid: Helicobacter brantae GCF 003364205 1
    • AAI clade 23-16-5 medoid: Helicobacter enhydrae GCF 001693335 1
    • AAI clade 23-16-6 medoid: Helicobacter pametensis ATCC 51478 GCF 000518225 1
    • AAI clade 23-16-7 medoid: Helicobacter mustelae GCF 900476215 1
  • AAI clade 23-17 medoid: Hydrogenimonas cancrithermarum GCF 030296055 1
  • AAI clade 23-18 medoid: Nitrosophilus kaiyonis GCF 027943725 1
  • AAI clade 23-19 medoid: Candidatus Sulfurimonas baltica GCF 015265455 1
  • AAI clade 23-20 medoid: Sulfurovum riftiae GCF 001595645 1
  • AAI clade 23-21 medoid: Sulfurimonas hydrogeniphila GCF 009068765 1
  • AAI clade 23-22 medoid: Sulfurospirillum halorespirans DSM 13726 GCF 001723605 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1