AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 22-1
medoid: Thermotoga maritima MSB8 GCF 000390265 1
-
AAI clade 22-2
medoid: Thermodesulfobacterium commune DSM 2178 GCF 000746435 1
-
AAI clade 22-3
medoid: Thermocrinis ruber GCF 000512735 1
-
AAI clade 22-4
medoid: Petrotoga miotherma DSM 10691 GCF 002895605 1
-
AAI clade 22-5
medoid: Desulfurobacterium pacificum GCF 900182835 1
8 datasets: Balnearium lithotrophicum GCF 900182585 1 (AAI: 64.93%), Desulfurobacterium atlanticum GCF 900188395 1 (AAI: 58.57%), Desulfurobacterium indicum GCF 001968985 1 (AAI: 58.69%), Desulfurobacterium pacificum GCF 900182835 1 (AAI: 100.0%), Desulfurobacterium thermolithotrophum DSM 11699 GCF 000191045 1 (AAI: 65.81%), Phorcysia thermohydrogeniphila GCF 004339575 1 (AAI: 65.08%), Thermovibrio ammonificans HB 1 GCF 000185805 1 (AAI: 65.32%), and Thermovibrio guaymasensis GCF 003633715 1 (AAI: 64.69%)
-
AAI clade 22-6
medoid: Candidatus Mycalebacterium zealandia GCA 014075295 1
-
AAI clade 22-7
medoid: Hippea alviniae EP5 r GCF 000420385 1
-
AAI clade 22-8
medoid: Persephonella hydrogeniphila GCF 900215515 1
-
AAI clade 22-9
medoid: Sulfurihydrogenibium azorense Az Fu1 GCF 000021545 1
-
AAI clade 22-10
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
-
AAI clade 22-1
medoid: Thermotoga maritima MSB8 GCF 000390265 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1