AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 21-1 medoid: Haloarcula marismortui ATCC 43049 GCF 000011085 1
  • AAI clade 21-2 medoid: Haloferax marisrubri GCF 001469875 2
  • AAI clade 21-3 medoid: Halorubrum salipaludis GCF 002286985 1
  • AAI clade 21-4 medoid: Halobacterium hubeiense GCF 001488575 1
  • AAI clade 21-5 medoid: Methanohalophilus portucalensis FDF 1 GCF 003722115 1
  • AAI clade 21-6 medoid: Natrinema marinum GCF 024296685 1
  • AAI clade 21-7 medoid: Archaeoglobus fulgidus DSM 4304 GCF 000008665 1
  • AAI clade 21-8 medoid: Pyrodictium delaneyi GCF 001412615 1
  • AAI clade 21-9 medoid: Haladaptatus litoreus GCF 900156425 1
  • AAI clade 21-10 medoid: Halorussus limi GCF 023238205 1
  • AAI clade 21-11 medoid: Methanosarcina vacuolata Z 761 GCF 000969905 1
  • AAI clade 21-12 medoid: Methanobacterium formicicum GCF 029848115 1
  • AAI clade 21-13 medoid: Methanocaldococcus bathoardescens GCF 000739065 1
  • AAI clade 21-14 medoid: Acidianus ambivalens GCF 009428885 1
  • AAI clade 21-15 medoid: Thermococcus thermotolerans GCF 024707485 1
  • AAI clade 21-16 medoid: Pyrobaculum aerophilum str. IM2 GCF 000007225 1
  • AAI clade 21-17 medoid: Wolframiiraptor gerlachensis asm GCA 021323375 2
  • AAI clade 21-18 medoid: Methanococcoides orientis GCF 021184045 1
  • AAI clade 21-19 medoid: Halobellus limi GCF 004799685 1
  • AAI clade 21-20 medoid: Haloglomus halophilum GCF 024298885 1
  • AAI clade 21-21 medoid: Halococcus qingdaonensis GCF 024508235 1
  • AAI clade 21-22 medoid: Haloprofundus halophilus GCF 003439925 1
  • AAI clade 21-23 medoid: Haloplanus rubicundus GCF 003342675 1
  • AAI clade 21-24 medoid: Halosimplex pelagicum GCF 013415905 1
    • AAI clade 21-24-1 medoid: Halorhabdus amylolytica GCF 004944975 1
    • AAI clade 21-24-2 medoid: Halococcoides cellulosivorans GCF 003058365 1
    • AAI clade 21-24-3 medoid: Halosimplex pelagicum GCF 013415905 1
    • AAI clade 21-24-4 medoid: Halovenus aranensis GCF 900100385 1
    • AAI clade 21-24-5 medoid: Halovenus rubra GCF 026586665 1
    • AAI clade 21-24-6 medoid: Salinirussus salinus GCF 009831455 1
      1 dataset: Salinirussus salinus GCF 009831455 1 (AAI: 100.0%)
  • AAI clade 21-25 medoid: Methanobrevibacter thaueri GCF 003111625 1
  • AAI clade 21-26 medoid: Methanoculleus sediminis GCF 001017125 1
  • AAI clade 21-27 medoid: Nitrosopumilus ureiphilus GCF 013407185 1
  • AAI clade 21-28 medoid: Methanolobus vulcani GCF 900100715 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1