AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
    • AAI clade 20-1 medoid: Pseudoalteromonas distincta GCF 000814675 1
    • AAI clade 20-2 medoid: Pseudoalteromonas galatheae GCF 005886105 2
    • AAI clade 20-3 medoid: Shewanella aquimarina GCF 023349185 1
    • AAI clade 20-4 medoid: Shewanella carassii GCF 002777975 1
    • AAI clade 20-5 medoid: Francisella tularensis subsp. novicida U112 GCF 000833375 1
    • AAI clade 20-6 medoid: Shewanella decolorationis GCF 030160495 1
    • AAI clade 20-7 medoid: Shewanella oncorhynchi GCF 012584455 1
    • AAI clade 20-8 medoid: Neiella holothuriorum GCF 019457915 1
    • AAI clade 20-9 medoid: Hydrogenovibrio marinus DSM 11271 GCF 000711315 1
    • AAI clade 20-10 medoid: Moritella marina ATCC 15381 GCF 000381865 1
    • AAI clade 20-11 medoid: Parashewanella curva GCF 003675895 1
    • AAI clade 20-12 medoid: Pseudoalteromonas shioyasakiensis GCF 001550135 1
    • AAI clade 20-13 medoid: Pseudoalteromonas amylolytica GCF 001854605 1
    • AAI clade 20-14 medoid: Pseudoalteromonas rhizosphaerae GCF 902498845 1
    • AAI clade 20-15 medoid: Psychrosphaera aquimarina GCF 032461525 1
    • AAI clade 20-16 medoid: Shewanella pneumatophori GCF 023283895 1
    • AAI clade 20-17 medoid: Agarivorans albus GCF 019670105 1
    • AAI clade 20-18 medoid: Alishewanella agri BL06 GCF 000272005 1
    • AAI clade 20-19 medoid: Cognaticolwellia aestuarii GCF 002000025 1
    • AAI clade 20-20 medoid: Cysteiniphilum litorale GCF 003428165 1
    • AAI clade 20-21 medoid: Ferrimonas marina GCF 900129905 1
    • AAI clade 20-22 medoid: Idiomarina abyssalis GCF 001294685 1
    • AAI clade 20-23 medoid: Pseudidiomarina fusca GCF 032227045 1
    • AAI clade 20-24 medoid: Rheinheimera pacifica GCF 900108485 1
      • AAI clade 20-24-1 medoid: Rheinheimera maricola GCF 016918075 2
        1 dataset: Rheinheimera maricola GCF 016918075 2 (AAI: 100.0%)
      • AAI clade 20-24-2 medoid: Rheinheimera pacifica GCF 900108485 1
      • AAI clade 20-24-3 medoid: Rheinheimera aquimaris GCF 020531985 1
      • AAI clade 20-24-4 medoid: Rheinheimera baltica DSM 14885 GCF 000425345 1
      • AAI clade 20-24-5 medoid: Rheinheimera pleomorphica GCF 011634895 1
      • AAI clade 20-24-6 medoid: Rheinheimera salexigens GCF 001752395 1
      • AAI clade 20-24-7 medoid: Rheinheimera metallidurans GCF 036983985 1
    • AAI clade 20-25 medoid: Rheinheimera faecalis GCF 021290965 1
    • AAI clade 20-26 medoid: Shewanella holmiensis GCF 025370255 1
    • AAI clade 20-27 medoid: Shewanella mesophila GCF 019457515 1
    • AAI clade 20-28 medoid: Shewanella amazonensis SB2B GCF 000015245 1
    • AAI clade 20-29 medoid: Shewanella nanhaiensis GCF 019457885 1
    • AAI clade 20-30 medoid: Shewanella litoralis GCF 009828585 1
    • AAI clade 20-31 medoid: Suttonella ornithocola GCF 001889065 1
    • AAI clade 20-32 medoid: Thalassotalea loyana GCF 030161435 1
    • AAI clade 20-33 medoid: Thalassomonas actiniarum GCF 000948975 2
    • AAI clade 20-34 medoid: Vibrio tetraodonis GCF 003350295 1
    • AAI clade 20-35 medoid: Alkalimonas delamerensis GCF 030717955 1
    • AAI clade 20-36 medoid: Arsukibacterium perlucidum DSM 18276 GCF 000382165 1
    • AAI clade 20-37 medoid: Saccharobesus litoralis GCF 003063625 1
    • AAI clade 20-38 medoid: Colwellia demingiae GCF 007954275 1
    • AAI clade 20-39 medoid: Granulosicoccus antarcticus IMCC3135 GCF 002215215 1
    • AAI clade 20-40 medoid: Halofilum ochraceum GCF 001614315 2
    • AAI clade 20-41 medoid: Kangiella spongicola GCF 003194565 2
    • AAI clade 20-42 medoid: Leptospira venezuelensis GCF 002150035 1
    • AAI clade 20-43 medoid: Leucothrix pacifica GCF 003172875 1
    • AAI clade 20-44 medoid: Methylophaga thiooxydans DMS010 GCF 000156355 1
    • AAI clade 20-45 medoid: Motilimonas eburnea GCF 021295345 1
    • AAI clade 20-46 medoid: Natronospira proteinivora GCF 024170465 1
    • AAI clade 20-47 medoid: Zobellella denitrificans GCF 002237365 1
    • AAI clade 20-48 medoid: Pleionea mediterranea GCF 003148745 1
    • AAI clade 20-49 medoid: Pseudoalteromonas aurantia 208 GCF 014858725 1
    • AAI clade 20-50 medoid: Pseudoalteromonas piratica GCF 000788395 1
    • AAI clade 20-51 medoid: Psychromonas ossibalaenae ATCC BAA 1528 GCF 000381745 1
    • AAI clade 20-52 medoid: Rappaport israeli GCF 001888055 1
    • AAI clade 20-53 medoid: Shewanella kaireitica GCF 023284045 1
    • AAI clade 20-54 medoid: Shewanella sediminis HAW EB3 GCF 000018025 1
    • AAI clade 20-55 medoid: Shewanella avicenniae GCF 017354945 1
    • AAI clade 20-56 medoid: Shewanella benthica GCF 015069875 1
    • AAI clade 20-57 medoid: Shewanella goraebulensis GCF 030252245 1
    • AAI clade 20-58 medoid: Solimonas marina GCF 012241385 1
    • AAI clade 20-59 medoid: Sulfurivirga caldicuralii GCF 900141795 1
    • AAI clade 20-60 medoid: Thalassotalea sediminis GCF 030295915 1
    • AAI clade 20-61 medoid: Thiomicrorhabdus immobilis GCF 021654855 1
    • AAI clade 20-62 medoid: Thiomicrorhabdus marina GCF 017571465 1
    • AAI clade 20-63 medoid: Thiomicrospira microaerophila GCF 000934765 1
    • AAI clade 20-64 medoid: Thiospirillum jenense GCF 014145225 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1