AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
    • AAI clade 19-1 medoid: Arthrobacter celericrescens GCF 003614925 1
    • AAI clade 19-2 medoid: Oerskovia gallyi GCF 014836745 1
    • AAI clade 19-3 medoid: Clavibacter phaseoli GCF 021923065 1
    • AAI clade 19-4 medoid: Agromyces ramosus GCF 004216665 1
      • AAI clade 19-4-1 medoid: Curtobacterium caseinilyticum GCF 030363035 1
      • AAI clade 19-4-2 medoid: Rathayibacter tritici GCF 002932875 1
        • AAI clade 19-4-2-1 medoid: Rathayibacter tritici GCF 002932875 1
        • AAI clade 19-4-2-2 medoid: Rathayibacter iranicus GCF 002933035 1
        • AAI clade 19-4-2-3 medoid: Rathayibacter tanaceti GCF 001634385 1
        • AAI clade 19-4-2-4 medoid: Rathayibacter toxicus DSM 7488 GCF 000425325 1
        • AAI clade 19-4-2-5 medoid: Amnibacterium flavum GCF 003097495 1
        • AAI clade 19-4-2-6 medoid: Rathayibacter caricis DSM 15933 GCF 003044275 1
        • AAI clade 19-4-2-7 medoid: Rathayibacter festucae DSM 15932 GCF 004011135 1
        • AAI clade 19-4-2-8 medoid: Rathayibacter oskolensis GCF 900177245 1
          1 dataset: Rathayibacter oskolensis GCF 900177245 1 (AAI: 100.0%)
      • AAI clade 19-4-3 medoid: Agromyces kandeliae GCF 009674665 1
      • AAI clade 19-4-4 medoid: Gulosibacter chungangensis GCF 008831155 1
      • AAI clade 19-4-5 medoid: Leifsonia virtsii GCF 030433675 1
      • AAI clade 19-4-6 medoid: Salinibacterium hongtaonis GCF 003065485 1
      • AAI clade 19-4-7 medoid: Agromyces lapidis GCF 009749405 1
      • AAI clade 19-4-8 medoid: Agromyces allii GCF 009749385 1
      • AAI clade 19-4-9 medoid: Herbiconiux aconitum GCF 024979235 1
      • AAI clade 19-4-10 medoid: Curtobacterium herbarum GCF 016907335 1
      • AAI clade 19-4-11 medoid: Zimmermannella faecalis ATCC 13722 GCF 000381765 1
      • AAI clade 19-4-12 medoid: Labedella phragmitis GCF 004078635 1
      • AAI clade 19-4-13 medoid: Microbacterium chengjingii GCF 011751765 2
      • AAI clade 19-4-14 medoid: Microcella indica GCF 013414345 1
      • AAI clade 19-4-15 medoid: Microterricola gilva GCF 004217495 1
      • AAI clade 19-4-16 medoid: Mycetocola zhadangensis GCF 003668565 1
      • AAI clade 19-4-17 medoid: Pseudoclavibacter caeni GCF 008831125 1
      • AAI clade 19-4-18 medoid: Pseudoclavibacter terrae GCF 008831075 1
      • AAI clade 19-4-19 medoid: Agrococcus lahaulensis DSM 17612 GCF 000425105 1
      • AAI clade 19-4-20 medoid: Agromyces intestinalis GCF 008365295 1
      • AAI clade 19-4-21 medoid: Agromyces hippuratus GCF 013410355 1
      • AAI clade 19-4-22 medoid: Amnibacterium kyonggiense GCF 004364555 1
      • AAI clade 19-4-23 medoid: Rhodoluna limnophila GCF 005845365 1
      • AAI clade 19-4-24 medoid: Aurantimicrobium minutum GCF 002355535 1
      • AAI clade 19-4-25 medoid: Protaetiibacter mangrovi GCF 024752305 1
      • AAI clade 19-4-26 medoid: Humibacter ginsenosidimutans GCF 007859675 1
      • AAI clade 19-4-27 medoid: Klugiella xanthotipulae GCF 006716695 1
      • AAI clade 19-4-28 medoid: Microcella daejeonensis GCF 026625045 1
      • AAI clade 19-4-29 medoid: Mycetocola saprophilus GCF 000718085 1
      • AAI clade 19-4-30 medoid: Schumannella luteola GCF 013408685 1
    • AAI clade 19-5 medoid: Intrasporangium flavum GCF 001956915 1
    • AAI clade 19-6 medoid: Brevibacterium sediminis GCF 013623905 1
    • AAI clade 19-7 medoid: Cryobacterium glaciale GCF 004402535 1
    • AAI clade 19-8 medoid: Microbacterium hibisci GCF 015278255 1
    • AAI clade 19-9 medoid: Microbacterium oxydans GCF 006540085 1
    • AAI clade 19-10 medoid: Cellulomonas dongxiuzhuiae GCF 017581985 1
    • AAI clade 19-11 medoid: Demequina silvatica GCF 000971215 1
    • AAI clade 19-12 medoid: Leucobacter chironomi DSM 19883 GCF 000421845 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1