AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 19-1 medoid: Arthrobacter celericrescens GCF 003614925 1
    • AAI clade 19-1-1 medoid: Micrococcus endophyticus GCF 014205115 1
    • AAI clade 19-1-2 medoid: Kocuria rhizophila GCF 003667225 1
    • AAI clade 19-1-3 medoid: Glutamicibacter mishrai GCF 012221945 1
    • AAI clade 19-1-4 medoid: Paenarthrobacter histidinolovorans GCF 014647595 1
    • AAI clade 19-1-5 medoid: Rothia halotolerans GCF 004136635 1
    • AAI clade 19-1-6 medoid: Sinomonas humi GCF 000802235 1
      • AAI clade 19-1-6-1 medoid: Sinomonas cellulolyticus GCF 016735455 1
      • AAI clade 19-1-6-2 medoid: Sinomonas albida GCF 004919045 1
      • AAI clade 19-1-6-3 medoid: Sinomonas humi GCF 000802235 1
      • AAI clade 19-1-6-4 medoid: Sinomonas mesophila GCF 001999765 1
        1 dataset: Sinomonas mesophila GCF 001999765 1 (AAI: 100.0%)
    • AAI clade 19-1-7 medoid: Arthrobacter antioxidans GCF 023100725 1
    • AAI clade 19-1-8 medoid: Arthrobacter gallicola GCF 014836775 1
    • AAI clade 19-1-9 medoid: Arthrobacter alpinus GCF 900105965 1
    • AAI clade 19-1-10 medoid: Enteractinococcus coprophilus GCF 006716305 1
    • AAI clade 19-1-11 medoid: Nesterenkonia salmonea GCF 005771525 1
    • AAI clade 19-1-12 medoid: Pseudarthrobacter equi GCF 900105535 1
    • AAI clade 19-1-13 medoid: Paeniglutamicibacter quisquiliarum GCF 019084045 1
  • AAI clade 19-2 medoid: Oerskovia gallyi GCF 014836745 1
  • AAI clade 19-3 medoid: Clavibacter phaseoli GCF 021923065 1
  • AAI clade 19-4 medoid: Agromyces ramosus GCF 004216665 1
  • AAI clade 19-5 medoid: Intrasporangium flavum GCF 001956915 1
  • AAI clade 19-6 medoid: Brevibacterium sediminis GCF 013623905 1
  • AAI clade 19-7 medoid: Cryobacterium glaciale GCF 004402535 1
  • AAI clade 19-8 medoid: Microbacterium hibisci GCF 015278255 1
  • AAI clade 19-9 medoid: Microbacterium oxydans GCF 006540085 1
  • AAI clade 19-10 medoid: Cellulomonas dongxiuzhuiae GCF 017581985 1
  • AAI clade 19-11 medoid: Demequina silvatica GCF 000971215 1
  • AAI clade 19-12 medoid: Leucobacter chironomi DSM 19883 GCF 000421845 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1