AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
    • AAI clade 18-1 medoid: Burkholderia cepacia GCF 900446175 1
    • AAI clade 18-2 medoid: Roseateles asaccharophilus GCF 004362405 1
    • AAI clade 18-3 medoid: Acidovorax delafieldii GCF 007993815 1
    • AAI clade 18-4 medoid: Morococcus cerebrosus GCF 000813705 1
    • AAI clade 18-5 medoid: Paraburkholderia caffeinilytica GCF 902859905 1
    • AAI clade 18-6 medoid: Ralstonia wenshanensis GCF 021173085 1
    • AAI clade 18-7 medoid: Chromobacterium piscinae GCF 021129175 1
    • AAI clade 18-8 medoid: Massilia puerhi GCF 009861485 1
      • AAI clade 18-8-1 medoid: Janthinobacterium kumbetense GCF 023703445 1
      • AAI clade 18-8-2 medoid: Herbaspirillum aquaticum GCF 002213425 1
      • AAI clade 18-8-3 medoid: Massilia puerhi GCF 009861485 1
        • AAI clade 18-8-3-1 medoid: Oryzomonas rubra GCF 008369015 1
        • AAI clade 18-8-3-2 medoid: Herminiimonas arsenitoxidans GCF 900130075 1
        • AAI clade 18-8-3-3 medoid: Massilia puerhi GCF 009861485 1
        • AAI clade 18-8-3-4 medoid: Telluria mixta GCF 024756225 1
        • AAI clade 18-8-3-5 medoid: Aquella oligotrophica GCF 002892535 1
        • AAI clade 18-8-3-6 medoid: Derxia gummosa DSM 723 GCF 000482785 1
        • AAI clade 18-8-3-7 medoid: Duodenibacillus massiliensis GCF 900128485 1
        • AAI clade 18-8-3-8 medoid: Ephemeroptericola cinctiostellae GCF 003339525 1
        • AAI clade 18-8-3-9 medoid: Ferrigenium kumadai GCF 018324385 1
        • AAI clade 18-8-3-10 medoid: Ferriphaselus amnicola GCF 000974685 2
        • AAI clade 18-8-3-11 medoid: Ferrovum myxofaciens GCF 000735045 1
        • AAI clade 18-8-3-12 medoid: Georgfuchsia toluolica GCF 907163265 1
        • AAI clade 18-8-3-13 medoid: Mariprofundus aestuarium GCF 002795805 1
        • AAI clade 18-8-3-14 medoid: Massilia agrisoli GCF 020831365 1
        • AAI clade 18-8-3-15 medoid: Massilia eburnea GCF 009720745 1
        • AAI clade 18-8-3-16 medoid: Noviherbaspirillum malthae GCF 015352985 1
        • AAI clade 18-8-3-17 medoid: Noviherbaspirillum pedocola GCF 016632335 1
        • AAI clade 18-8-3-18 medoid: Oxalicibacterium flavum GCF 014635065 1
        • AAI clade 18-8-3-19 medoid: Oxalobacter paraformigenes GCF 000158475 2
        • AAI clade 18-8-3-20 medoid: Oxalobacter vibrioformis GCF 027118995 1
        • AAI clade 18-8-3-21 medoid: Parvibium lacunae GCF 003335215 1
        • AAI clade 18-8-3-22 medoid: Pelobacter propionicus DSM 2379 GCF 000015045 1
        • AAI clade 18-8-3-23 medoid: Peredibacter starrii GCF 034259205 1
        • AAI clade 18-8-3-24 medoid: Poriferisphaera corsica GCF 007747445 1
          1 dataset: Poriferisphaera corsica GCF 007747445 1 (AAI: 100.0%)
        • AAI clade 18-8-3-25 medoid: Pseudoduganella rivuli GCF 009674485 1
        • AAI clade 18-8-3-26 medoid: Rugamonas brunnea GCF 014042345 1
        • AAI clade 18-8-3-27 medoid: Solimicrobium silvestre GCF 002976435 1
        • AAI clade 18-8-3-28 medoid: Sideroxyarcus emersonii GCF 021654335 1
      • AAI clade 18-8-4 medoid: Pelistega suis GCF 013133795 1
      • AAI clade 18-8-5 medoid: Zoogloea oryzae GCF 030161255 1
      • AAI clade 18-8-6 medoid: Duganella levis GCF 009857605 1
      • AAI clade 18-8-7 medoid: Collimonas pratensis GCF 001584185 1
      • AAI clade 18-8-8 medoid: Massilia violaceinigra GCF 002752675 1
      • AAI clade 18-8-9 medoid: Nitrosomonas supralitoralis GCF 003011925 2
      • AAI clade 18-8-10 medoid: Pseudoduganella albidiflava GCF 004322755 1
      • AAI clade 18-8-11 medoid: Sulfuriferula multivorans GCF 003851125 1
      • AAI clade 18-8-12 medoid: Thiomonas intermedia GCF 002028405 1
      • AAI clade 18-8-13 medoid: Dechloromonas hortensis GCF 009469765 1
      • AAI clade 18-8-14 medoid: Geothrix fermentans DSM 14018 GCF 000428885 1
      • AAI clade 18-8-15 medoid: Limnobacter alexandrii GCF 005871185 1
      • AAI clade 18-8-16 medoid: Methyloversatilis universalis FAM5 GCF 000214035 2
      • AAI clade 18-8-17 medoid: Undibacterium macrobrachii GCF 014652415 1
      • AAI clade 18-8-18 medoid: Undibacterium crateris GCF 010078235 1
    • AAI clade 18-9 medoid: Cupriavidus alkaliphilus GCF 900094595 1
    • AAI clade 18-10 medoid: Pandoraea sputorum GCF 000814845 2
    • AAI clade 18-11 medoid: Paraburkholderia acidiphila GCF 009789655 1
    • AAI clade 18-12 medoid: Caballeronia zhejiangensis GCF 000698575 1
    • AAI clade 18-13 medoid: Silvimonas iriomotensis GCF 014645535 1
    • AAI clade 18-14 medoid: Corallococcus coralloides DSM 2259 GCF 000255295 1
    • AAI clade 18-15 medoid: Methylovorus mays GCF 020531915 1
    • AAI clade 18-16 medoid: Polynucleobacter corsicus GCF 018688255 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1