AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 17-1 medoid: Blautia hominis GCF 002270465 1
  • AAI clade 17-2 medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
  • AAI clade 17-3 medoid: Clostridium moniliforme GCF 017873235 1
  • AAI clade 17-4 medoid: Romboutsia timonensis GCF 900106845 1
    • AAI clade 17-4-1 medoid: Paraclostridium bifermentans GCF 019916025 1
    • AAI clade 17-4-2 medoid: Romboutsia ilealis GCF 900015215 1
      • AAI clade 17-4-2-1 medoid: Clostridioides difficile ATCC 9689 DSM 1296 GCF 000438845 1
      • AAI clade 17-4-2-2 medoid: Peptacetobacter hominis GCF 006861675 1
      • AAI clade 17-4-2-3 medoid: Romboutsia lituseburensis DSM 797 GCF 900103615 1
      • AAI clade 17-4-2-4 medoid: Asaccharospora irregularis DSM 2635 GCF 900129815 1
      • AAI clade 17-4-2-5 medoid: Metaclostridioides mangenotii GCF 017873185 1
      • AAI clade 17-4-2-6 medoid: Romboutsia faecis GCF 014323405 1
      • AAI clade 17-4-2-7 medoid: Romboutsia ilealis GCF 900015215 1
      • AAI clade 17-4-2-8 medoid: Romboutsia maritimum GCF 002251085 2
    • AAI clade 17-4-3 medoid: Terrisporobacter glycolicus ATCC 14880 DSM 1288 GCF 000439105 1
    • AAI clade 17-4-4 medoid: Peptostreptococcus canis GCF 014229965 1
    • AAI clade 17-4-5 medoid: Parvimonas micra ATCC 33270 GCF 000154405 1
    • AAI clade 17-4-6 medoid: Serpentinicella alkaliphila GCF 004345905 1
    • AAI clade 17-4-7 medoid: Acetobacterium fimetarium GCF 014284475 1
    • AAI clade 17-4-8 medoid: Aminipila luticellarii GCF 004103735 1
    • AAI clade 17-4-9 medoid: Crassaminicella profunda GCF 019884785 1
    • AAI clade 17-4-10 medoid: Brotomerdimonas butyrica GCF 025567305 1
    • AAI clade 17-4-11 medoid: Hornefia porci GCF 001940235 1
    • AAI clade 17-4-12 medoid: Criibacterium bergeronii GCF 001693775 2
    • AAI clade 17-4-13 medoid: Tepidibacter aestuarii GCF 934924865 1
    • AAI clade 17-4-14 medoid: Fusibacter ferrireducens GCF 015352425 1
  • AAI clade 17-5 medoid: Faecalibacterium duncaniae GCF 010509575 1
  • AAI clade 17-6 medoid: Lawsonibacter hominis GCF 014287895 1
  • AAI clade 17-7 medoid: Clostridium indicum GCF 003432035 1
  • AAI clade 17-8 medoid: Faecalispora jeddahensis GCF 000577335 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1