AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
    • AAI clade 17-1 medoid: Blautia hominis GCF 002270465 1
    • AAI clade 17-2 medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
      • AAI clade 17-2-1 medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
        • AAI clade 17-2-1-1 medoid: Faecalicatena faecalis GCF 012524165 2
        • AAI clade 17-2-1-2 medoid: Anaerostipes hominis ex Lee et al 2021 GCF 002270485 1
        • AAI clade 17-2-1-3 medoid: Clostridium hylemonae DSM 15053 GCF 000156515 1
        • AAI clade 17-2-1-4 medoid: Anaerosacchariphilus hominis GCF 014290175 1
        • AAI clade 17-2-1-5 medoid: Sellimonas catena GCF 027924685 1
        • AAI clade 17-2-1-6 medoid: Coprococcus aceti GCF 025567285 1
        • AAI clade 17-2-1-7 medoid: Frisingicoccus caecimuris GCF 004340975 1
        • AAI clade 17-2-1-8 medoid: Diplocloster agilis GCF 019042275 1
        • AAI clade 17-2-1-9 medoid: Dorea longicatena DSM 13814 GCF 000154065 1
        • AAI clade 17-2-1-10 medoid: Eisenbergiella massiliensis GCF 900243045 1
        • AAI clade 17-2-1-11 medoid: Eubacterium segne GCF 014287775 1
        • AAI clade 17-2-1-12 medoid: Bariatricus massiliensis GCF 900086725 1
        • AAI clade 17-2-1-13 medoid: Herbinix luporum GCF 900070325 1
        • AAI clade 17-2-1-14 medoid: Zhenhengia yiwuensis GCF 014384995 1
        • AAI clade 17-2-1-15 medoid: Mediterraneibacter catenae GCF 008691045 1
        • AAI clade 17-2-1-16 medoid: Vallitalea guaymasensis GCF 003313305 1
        • AAI clade 17-2-1-17 medoid: Lachnotalea glycerini GCF 003201285 1
        • AAI clade 17-2-1-18 medoid: Anaerostipes hadrus ATCC 29173 JCM 17467 GCF 000332875 2
        • AAI clade 17-2-1-19 medoid: Anaerocolumna sedimenticola GCF 009931695 1
        • AAI clade 17-2-1-20 medoid: Clostridium polysaccharolyticum GCF 900111595 1
        • AAI clade 17-2-1-21 medoid: Anaerotignum faecicola GCF 003865035 1
        • AAI clade 17-2-1-22 medoid: Candidatus Colimonas fimequi GCA 018065295 1
        • AAI clade 17-2-1-23 medoid: Catonella massiliensis GCF 016651435 1
        • AAI clade 17-2-1-24 medoid: Clostridium colinum GCF 940677205 1
          1 dataset: Clostridium colinum GCF 940677205 1 (AAI: 100.0%)
        • AAI clade 17-2-1-25 medoid: Defluviitalea phaphyphila GCF 001466305 1
        • AAI clade 17-2-1-26 medoid: Jutongia hominis GCF 014384965 1
        • AAI clade 17-2-1-27 medoid: Leptospira yasudae GCF 003545925 1
        • AAI clade 17-2-1-28 medoid: Natranaerovirga hydrolytica GCF 004339095 1
        • AAI clade 17-2-1-29 medoid: Parablautia muri GCF 009917485 1
      • AAI clade 17-2-2 medoid: Roseburia rectibacter GCF 014287515 2
    • AAI clade 17-3 medoid: Clostridium moniliforme GCF 017873235 1
    • AAI clade 17-4 medoid: Romboutsia timonensis GCF 900106845 1
    • AAI clade 17-5 medoid: Faecalibacterium duncaniae GCF 010509575 1
    • AAI clade 17-6 medoid: Lawsonibacter hominis GCF 014287895 1
    • AAI clade 17-7 medoid: Clostridium indicum GCF 003432035 1
    • AAI clade 17-8 medoid: Faecalispora jeddahensis GCF 000577335 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1