AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
    • AAI clade 13-1 medoid: Bacteroides luhongzhouii GCF 009193295 2
    • AAI clade 13-2 medoid: Marinifilum breve GCF 003202155 1
    • AAI clade 13-3 medoid: Flavobacterium proteolyticum GCF 015223105 1
    • AAI clade 13-4 medoid: Flavivirga abyssicola GCF 030540775 2
    • AAI clade 13-5 medoid: Flavobacterium resistens GCF 009674815 1
    • AAI clade 13-6 medoid: Tenacibaculum singaporense GCF 003867015 1
    • AAI clade 13-7 medoid: Parabacteroides merdae ATCC 43184 GCF 025151215 1
    • AAI clade 13-8 medoid: Prevotella vespertina GCF 009728485 1
      • AAI clade 13-8-1 medoid: Prevotella intermedia ATCC 25611 DSM 20706 GCF 001953955 1
      • AAI clade 13-8-2 medoid: Prevotella melaninogenica ATCC 25845 GCF 000144405 1
      • AAI clade 13-8-3 medoid: Segatella copri GCF 026015395 1
      • AAI clade 13-8-4 medoid: Hallella mizrahii GCF 009695775 1
      • AAI clade 13-8-5 medoid: Hoylesella oralis ATCC 33269 GCF 000185145 2
      • AAI clade 13-8-6 medoid: Hallella multisaccharivorax DSM 17128 GCF 000218235 1
      • AAI clade 13-8-7 medoid: Hoylesella timonensis 4401737 DSM 22865 JCM 15640 GCF 000430565 1
      • AAI clade 13-8-8 medoid: Hoylesella loescheii DSM 19665 JCM 12249 ATCC 15930 GCF 000378085 1
      • AAI clade 13-8-9 medoid: Hoylesella marshii DSM 16973 JCM 13450 GCF 000146675 1
      • AAI clade 13-8-10 medoid: Prevotella bivia DSM 20514 GCF 000262545 1
      • AAI clade 13-8-11 medoid: Prevotella corporis DSM 18810 JCM 8529 GCF 000430525 1
      • AAI clade 13-8-12 medoid: Prevotella marseillensis GCF 900625065 1
      • AAI clade 13-8-13 medoid: Prevotella micans DSM 21469 JCM 16134 GCF 000373705 1
      • AAI clade 13-8-14 medoid: Prevotella veroralis DSM 19559 JCM 6290 GCF 000377625 1
      • AAI clade 13-8-15 medoid: Segatella albensis DSM 11370 JCM 12258 GCF 000426565 1
      • AAI clade 13-8-16 medoid: Segatella baroniae DSM 16972 JCM 13447 GCF 000426585 1
      • AAI clade 13-8-17 medoid: Segatella oris DSM 18711 JCM 12252 GCF 000377685 1
      • AAI clade 13-8-18 medoid: Prevotella herbatica GCF 017347605 1
      • AAI clade 13-8-19 medoid: Prevotella communis GCF 022024115 1
      • AAI clade 13-8-20 medoid: Candidatus Equicola faecalis GCA 018065185 1
      • AAI clade 13-8-21 medoid: Candidatus Prevotella equi GCA 018065145 1
      • AAI clade 13-8-22 medoid: Hallella colorans GCF 003096815 1
      • AAI clade 13-8-23 medoid: Hallella faecis GCF 018789675 1
      • AAI clade 13-8-24 medoid: Hoylesella enoeca JCM 12259 GCF 000613405 1
      • AAI clade 13-8-25 medoid: Hoylesella nanceiensis DSM 19126 JCM 15639 GCF 000379965 1
      • AAI clade 13-8-26 medoid: Leyella lascolaii GCF 900079775 1
      • AAI clade 13-8-27 medoid: Leyella stercorea DSM 18206 GCF 000235885 1
      • AAI clade 13-8-28 medoid: Palleniella muris GCF 004792655 1
      • AAI clade 13-8-29 medoid: Prevotella koreensis GCF 003977605 1
      • AAI clade 13-8-30 medoid: Prevotella lacticifex GCF 019973375 1
      • AAI clade 13-8-31 medoid: Segatella bryantii GCF 019973295 1
        1 dataset: Segatella bryantii GCF 019973295 1 (AAI: 100.0%)
      • AAI clade 13-8-32 medoid: Segatella buccae ATCC 33574 GCF 000184945 1
      • AAI clade 13-8-33 medoid: Segatella cerevisiae GCF 024054555 1
      • AAI clade 13-8-34 medoid: Xylanibacter muris GCF 013166605 1
      • AAI clade 13-8-35 medoid: Xylanibacter oryzae DSM 17970 GCF 000585355 1
    • AAI clade 13-9 medoid: Salegentibacter agarivorans GCF 900113135 1
    • AAI clade 13-10 medoid: Alistipes provencensis GCF 900083545 1
    • AAI clade 13-11 medoid: Muricauda lutisoli GCF 017313105 1
    • AAI clade 13-12 medoid: Chryseobacterium cucumeris GCF 001593385 1
    • AAI clade 13-13 medoid: Fulvivirga ulvae GCF 021389975 1
    • AAI clade 13-14 medoid: Flavobacterium yafengii GCF 030010375 1
    • AAI clade 13-15 medoid: Mucilaginibacter endophyticus GCF 003351025 1
    • AAI clade 13-16 medoid: Pedobacter riviphilus GCF 014692875 1
    • AAI clade 13-17 medoid: Pontibacter ramchanderi GCF 002846395 1
    • AAI clade 13-18 medoid: Algoriphagus algorifonticola GCF 007655305 1
    • AAI clade 13-19 medoid: Sphingobacterium puteale GCF 003627955 1
    • AAI clade 13-20 medoid: Aquimarina megaterium XH134 GCF 000520975 1
    • AAI clade 13-21 medoid: Aequorivita aquimaris GCF 001573155 1
    • AAI clade 13-22 medoid: Spirosoma aureum GCF 011604685 1
    • AAI clade 13-23 medoid: Maribacter forsetii DSM 18668 GCF 000744105 1
    • AAI clade 13-24 medoid: Chitinophaga eiseniae GCF 900167135 1
    • AAI clade 13-25 medoid: Longitalea arenae GCF 016924755 1
    • AAI clade 13-26 medoid: Dyadobacter psychrophilus GCF 900167945 1
    • AAI clade 13-27 medoid: Winogradskyella thalassocola GCF 900099995 1
    • AAI clade 13-28 medoid: Hymenobacter glacieicola GCF 014640315 1
    • AAI clade 13-29 medoid: Fodinibius halophilus GCF 011059105 1
    • AAI clade 13-30 medoid: Hymenobacter rubidus GCF 016734815 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1