AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
    • AAI clade 12-1 medoid: Azospirillum brasilense GCF 008365405 1
    • AAI clade 12-2 medoid: Asaia krungthepensis NRIC 0535 GCF 025995175 1
    • AAI clade 12-3 medoid: Aurantimonas endophytica GCF 014196845 1
    • AAI clade 12-4 medoid: Gluconobacter potus GCF 001580675 1
    • AAI clade 12-5 medoid: Gluconobacter frateurii GCF 002723955 1
    • AAI clade 12-6 medoid: Acetobacter sicerae GCF 011516765 1
    • AAI clade 12-7 medoid: Acetobacter fabarum DSM 19596 GCF 025995875 1
    • AAI clade 12-8 medoid: Acetobacter nitrogenifigens DSM 23921 NBRC 105050 GCF 000429165 1
    • AAI clade 12-9 medoid: Afifella marina DSM 2698 GCF 003258905 1
    • AAI clade 12-10 medoid: Azospirillum melinis GCF 017876055 1
    • AAI clade 12-11 medoid: Bombella pluederhausensis GCF 026385525 1
      • AAI clade 12-11-1 medoid: Bombella apis GCF 014878255 1
      • AAI clade 12-11-2 medoid: Bombella pollinis GCF 026385485 1
      • AAI clade 12-11-3 medoid: Saccharibacter floricola DSM 15669 GCF 000378165 1
      • AAI clade 12-11-4 medoid: Aristophania vespae GCF 009906835 1
      • AAI clade 12-11-5 medoid: Bombella mellum GCF 014048465 1
        2 datasets: Bombella dulcis GCF 026385505 1 (AAI: 87.0%) and Bombella mellum GCF 014048465 1 (AAI: 100.0%)
      • AAI clade 12-11-6 medoid: Bombella intestini GCF 002003665 1
      • AAI clade 12-11-7 medoid: Bombella pluederhausensis GCF 026385525 1
      • AAI clade 12-11-8 medoid: Formicincola oecophyllae GCF 006542395 2
      • AAI clade 12-11-9 medoid: Oecophyllibacter saccharovorans GCF 006542375 1
    • AAI clade 12-12 medoid: Gluconacetobacter liquefaciens GCF 003350405 1
    • AAI clade 12-13 medoid: Komagataeibacter sucrofermentans DSM 15973 GCF 025994575 1
    • AAI clade 12-14 medoid: Myxococcus virescens GCF 007989405 1
    • AAI clade 12-15 medoid: Novacetimonas maltaceti GCF 002906255 1
    • AAI clade 12-16 medoid: Amorphus coralli DSM 19760 GCF 000374525 1
    • AAI clade 12-17 medoid: Stigmatella ashevillena GCF 028368975 1
    • AAI clade 12-18 medoid: Paramagnetospirillum caucaseum GCF 000342045 1
    • AAI clade 12-19 medoid: Acidiphilium angustum ATCC 35903 GCF 000701585 1
    • AAI clade 12-20 medoid: Acidocella facilis ATCC 35904 GCF 000687875 1
    • AAI clade 12-21 medoid: Archangium violaceum Cb vi76 GCF 000733295 1
    • AAI clade 12-22 medoid: Aureimonas flava GCF 003583935 1
    • AAI clade 12-23 medoid: Belnapia arida GCF 016773205 1
    • AAI clade 12-24 medoid: Methylobacterium ajmalii GCF 016613415 1
    • AAI clade 12-25 medoid: Geminicoccus harenae GCF 014750705 1
    • AAI clade 12-26 medoid: Komagataeibacter swingsii DSM 16373 GCF 025994595 1
    • AAI clade 12-27 medoid: Methylopila capsulata GCF 016907975 1
    • AAI clade 12-28 medoid: Myxococcus eversor GCF 010894455 1
    • AAI clade 12-29 medoid: Nannocystis exedens GCF 002343915 1
    • AAI clade 12-30 medoid: Neokomagataea tanensis NBRC 106556 GCF 025994255 1
    • AAI clade 12-31 medoid: Niveispirillum cyanobacteriorum GCF 002868735 1
    • AAI clade 12-32 medoid: Rhodospirillum rubrum ATCC 11170 GCF 000013085 1
    • AAI clade 12-33 medoid: Rhodovibrio salinarum DSM 9154 GCF 000515255 1
    • AAI clade 12-34 medoid: Roseococcus suduntuyensis GCF 014196305 1
    • AAI clade 12-35 medoid: Roseomonas gilardii subsp. rosea ATCC BAA 691 GCF 000518625 1
    • AAI clade 12-36 medoid: Siccirubricoccus soli GCF 024102615 1
    • AAI clade 12-37 medoid: Skermanella rosea GCF 016806835 2
    • AAI clade 12-38 medoid: Oceanibaculum nanhaiense GCF 002148795 1
    • AAI clade 12-39 medoid: Pelagibius marinus GCF 014925385 1
    • AAI clade 12-40 medoid: Acidisoma silvae GCF 020618775 1
    • AAI clade 12-41 medoid: Aestuariispira ectoiniformans GCF 025136295 1
    • AAI clade 12-42 medoid: Anaeromyxobacter terrae GCF 022690685 1
    • AAI clade 12-43 medoid: Ancylobacter koreensis GCF 023016525 1
    • AAI clade 12-44 medoid: Corallococcus praedator GCF 003612125 1
    • AAI clade 12-45 medoid: Elioraea tepidiphila DSM 17972 GCF 000378465 1
    • AAI clade 12-46 medoid: Reyranella massiliensis 521 GCF 000312425 1
    • AAI clade 12-47 medoid: Pseudoroseomonas vastitatis GCF 003604215 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1