AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 1-1
medoid: Serratia entomophila GCF 021462285 1
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AAI clade 1-2
medoid: Citrobacter freundii ATCC 8090 MTCC 1658 NBRC 12681 GCF 011064845 1
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AAI clade 1-3
medoid: Enterobacter chuandaensis GCF 003594915 1
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AAI clade 1-4
medoid: Vibrio rotiferianus CAIM 577 LMG 21460 GCF 002741985 1
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AAI clade 1-5
medoid: Aeromonas veronii bv veronii GCF 001908535 1
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AAI clade 1-6
medoid: Pectobacterium polonicum GCF 005497185 1
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AAI clade 1-7
medoid: Photorhabdus caribbeanensis GCF 018448885 1
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AAI clade 1-8
medoid: Vibrio crassostreae GCF 001048535 1
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AAI clade 1-8-1
medoid: Vibrio crassostreae GCF 001048535 1
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AAI clade 1-8-2
medoid: Vibrio gallaecicus GCF 005281825 1
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AAI clade 1-8-3
medoid: Vibrio lentus GCF 014878155 1
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AAI clade 1-8-4
medoid: Aliivibrio fischeri ATCC 7744 JCM 18803 DSM 507 GCF 016464335 1
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AAI clade 1-8-5
medoid: Vibrio chagasii GCF 005281815 1
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AAI clade 1-8-6
medoid: Aliivibrio sifiae GCF 002954715 1
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AAI clade 1-8-7
medoid: Vibrio comitans NBRC 102076 GCF 006538565 1
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AAI clade 1-8-8
medoid: Vibrio cortegadensis GCF 024347395 1
1 dataset: Vibrio cortegadensis GCF 024347395 1 (AAI: 100.0%)
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AAI clade 1-8-9
medoid: Vibrio neonatus GCF 024346975 1
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AAI clade 1-8-10
medoid: Vibrio breoganii GCF 030410025 1
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AAI clade 1-8-11
medoid: Aliivibrio finisterrensis GCF 008933155 1
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AAI clade 1-8-12
medoid: Vibrio algicola GCF 009601765 2
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AAI clade 1-8-13
medoid: Vibrio algivorus GCF 030161215 1
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AAI clade 1-8-14
medoid: Vibrio casei GCF 002218025 2
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AAI clade 1-8-15
medoid: Vibrio fortis GCF 024347475 1
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AAI clade 1-8-16
medoid: Vibrio gallicus GCF 024346875 1
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AAI clade 1-8-17
medoid: Vibrio gelatinilyticus GCF 022836845 1
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AAI clade 1-8-18
medoid: Vibrio hibernica GCF 015223435 1
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AAI clade 1-8-19
medoid: Vibrio litoralis DSM 17657 GCF 000426765 1
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AAI clade 1-8-20
medoid: Vibrio qingdaonensis GCF 026191675 1
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AAI clade 1-8-21
medoid: Vibrio profundi GCF 005281835 1
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AAI clade 1-8-22
medoid: Vibrio rarus GCF 024347075 1
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AAI clade 1-8-23
medoid: Vibrio rumoiensis GCF 002218045 2
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AAI clade 1-8-24
medoid: Vibrio tapetis subsp. quintayensis GCF 030409945 1
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AAI clade 1-8-1
medoid: Vibrio crassostreae GCF 001048535 1
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AAI clade 1-9
medoid: Yersinia alsatica GCF 902170305 1
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AAI clade 1-10
medoid: Pantoea astica asm GCA 002434205 1
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AAI clade 1-11
medoid: Dickeya fangzhongdai GCF 002812485 1
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AAI clade 1-12
medoid: Limnobaculum allomyrinae GCF 016649425 1
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AAI clade 1-13
medoid: Photobacterium alginatilyticum GCF 009910675 1
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AAI clade 1-14
medoid: Providencia hangzhouensis GCF 029193595 2
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AAI clade 1-15
medoid: Xenorhabdus thuongxuanensis GCF 001908095 1
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AAI clade 1-16
medoid: Grimontia indica GCF 000333895 2
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AAI clade 1-17
medoid: Rahnella variigena GCF 003602185 1
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AAI clade 1-18
medoid: Oceanimonas doudoroffii GCF 002242685 1
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AAI clade 1-19
medoid: Proteus alimentorum GCF 002607735 1
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AAI clade 1-1
medoid: Serratia entomophila GCF 021462285 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1