ANI-based medoid clustering

The ANI clusters provide a high resolution view of the below-species structure of the datasets and facilitate genome-based typing.

  • ANI clade 1 medoid: uncultured Rothia sp. GCA 946222235 1
  • ANI clade 2 medoid: Rothia mucilaginosa GCA 004799365 1
    • ANI clade 2-1 medoid: Rothia mucilaginosa GCA 004799365 1
    • ANI clade 2-2 medoid: Rothia mucilaginosa GCA 014894835 1
    • ANI clade 2-3 medoid: Rothia mucilaginosa GCA 029850835 1
    • ANI clade 2-4 medoid: Rothia mucilaginosa GCA 905206135 1
      • ANI clade 2-4-1 medoid: Rothia sp. in high G C Gram positive bacteria GCA 019424005 1
      • ANI clade 2-4-2 medoid: uncultured Rothia sp. GCA 937976295 1
      • ANI clade 2-4-3 medoid: Rothia mucilaginosa GCA 905206135 1
        • ANI clade 2-4-3-1 medoid: uncultured Rothia sp. GCA 916720455 1
        • ANI clade 2-4-3-2 medoid: uncultured Rothia sp. GCA 902373395 1
        • ANI clade 2-4-3-3 medoid: uncultured Rothia sp. GCA 905199275 1
        • ANI clade 2-4-3-4 medoid: uncultured Rothia sp. GCA 905194865 1
        • ANI clade 2-4-3-5 medoid: Rothia mucilaginosa GCA 019423965 1
          1 dataset: Rothia mucilaginosa GCA 019423965 1 (ANI: 100.0%)
        • ANI clade 2-4-3-6 medoid: Rothia mucilaginosa GCA 938040755 1
      • ANI clade 2-4-4 medoid: uncultured Rothia sp. GCA 937935205 1
    • ANI clade 2-5 medoid: Rothia mucilaginosa GCA 023303065 1
  • ANI clade 3 medoid: Rothia aeria GCA 905370405 1
  • ANI clade 4 medoid: Rothia sp. ND6WE1A GCA 001683935 1
  • ANI clade 5 medoid: Rothia mucilaginosa GCA 001065135 1
  • ANI clade 6 medoid: Rothia sp. P100 GCA 023712425 1
  • ANI clade 7 medoid: Rothia sp. ZJ932 GCA 016924835 1
  • ANI clade 8 medoid: uncultured Rothia sp. GCA 902373285 1
  • ANI clade 9 medoid: uncultured Rothia sp. GCA 902461355 1
  • ANI clade 10 medoid: Rothia nasimurium GCA 928382285 1
  • ANI clade 11 medoid: Rothia nasisuis GCA 928392685 1
  • ANI clade 12 medoid: Rothia nasimurium GCA 928391935 1
  • ANI clade 13 medoid: Rothia koreensis GCA 004136575 1
  • ANI clade 14 medoid: Rothia kristinae GCA 025150355 1