AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
    • AAI clade 8-1 medoid: GCF 014534745 1
    • AAI clade 8-2 medoid: GCF 014773275 1
    • AAI clade 8-3 medoid: Pontibacter lucknowensis GCA 900156415 1
    • AAI clade 8-4 medoid: Cognataquiflexum aquatile GCA 003316845 1
    • AAI clade 8-5 medoid: GCF 014219015 1
    • AAI clade 8-6 medoid: GCF 002933815 1
    • AAI clade 8-7 medoid: Algoriphagus locisalis GCA 900116615 1
    • AAI clade 8-8 medoid: GCF 015533855 1
    • AAI clade 8-9 medoid: Dyadobacter jiangsuensis GCA 003014695 1
    • AAI clade 8-10 medoid: Hymenobacter yonginensis GCA 027625995 1
    • AAI clade 8-11 medoid: Mucilaginibacter inviolabilis GCA 011089895 1
    • AAI clade 8-12 medoid: Sphingobacterium chuzhouense GCA 014692525 1
    • AAI clade 8-13 medoid: Rufibacter latericius GCA 003721515 1
    • AAI clade 8-14 medoid: Sphingobacterium tabacisoli GCA 017908035 1
    • AAI clade 8-15 medoid: miga ZQ19A BG 687
    • AAI clade 8-16 medoid: Aquirufa aurantiipilula GCA 019923745 1
    • AAI clade 8-17 medoid: GCF 013912375 1
    • AAI clade 8-18 medoid: GCA 903887845 1
    • AAI clade 8-19 medoid: GCA 902168205 1
    • AAI clade 8-20 medoid: Hymenobacter lapidiphilus GCA 013377885 1
    • AAI clade 8-21 medoid: Hymenobacter rubidus GCA 016734815 1
    • AAI clade 8-22 medoid: Hymenobacter baengnokdamensis GCA 008728635 1
    • AAI clade 8-23 medoid: Rhodothermus marinus DSM 4252 GCA 000024845 1
    • AAI clade 8-24 medoid: Runella rosea GCA 003325355 1
    • AAI clade 8-25 medoid: Spirosoma arboris GCA 009754945 1
    • AAI clade 8-26 medoid: miga SS18A Bin 28 contigs
    • AAI clade 8-27 medoid: GCA 002390045 1
    • AAI clade 8-28 medoid: Hymenobacter edaphi GCA 003258365 1
    • AAI clade 8-29 medoid: Larkinella punicea GCA 003334855 1
    • AAI clade 8-30 medoid: miga AP18A bin 81
    • AAI clade 8-31 medoid: GCA 017303795 1
    • AAI clade 8-32 medoid: GCA 016721435 1
    • AAI clade 8-33 medoid: GCA 016715075 1
    • AAI clade 8-34 medoid: GCA 001769215 1
    • AAI clade 8-35 medoid: miga SS18A Bin 1 4 contigs
    • AAI clade 8-36 medoid: GCA 013388525 1
    • AAI clade 8-37 medoid: GCA 003246455 1
    • AAI clade 8-38 medoid: GCA 018267385 1
    • AAI clade 8-39 medoid: GCA 003519545 1
    • AAI clade 8-40 medoid: GCA 016720935 1
    • AAI clade 8-41 medoid: GCA 905182375 1
    • AAI clade 8-42 medoid: GCA 009785425 1
    • AAI clade 8-43 medoid: GCA 002342065 1
      • AAI clade 8-43-1 medoid: GCA 002342065 1
      • AAI clade 8-43-2 medoid: GCA 005787585 1
      • AAI clade 8-43-3 medoid: GCA 009927275 1
      • AAI clade 8-43-4 medoid: GCA 013288385 1
      • AAI clade 8-43-5 medoid: GCA 013297775 1
      • AAI clade 8-43-6 medoid: GCA 013298715 1
      • AAI clade 8-43-7 medoid: GCA 016185125 1
      • AAI clade 8-43-8 medoid: GCA 016705695 1
      • AAI clade 8-43-9 medoid: GCA 016709575 1
      • AAI clade 8-43-10 medoid: GCA 016715905 1
      • AAI clade 8-43-11 medoid: GCA 016787445 1
      • AAI clade 8-43-12 medoid: GCA 016787895 1
      • AAI clade 8-43-13 medoid: GCA 016788025 1
        1 dataset: GCA 016788025 1 (AAI: 100.0%)
      • AAI clade 8-43-14 medoid: GCA 018267655 1
    • AAI clade 8-44 medoid: GCA 903837605 1
    • AAI clade 8-45 medoid: GCA 016786925 1
    • AAI clade 8-46 medoid: GCA 016708845 1
    • AAI clade 8-47 medoid: GCA 903958625 1
    • AAI clade 8-48 medoid: GCA 016868485 1
    • AAI clade 8-49 medoid: GCA 013287545 1
    • AAI clade 8-50 medoid: GCA 016868875 1
    • AAI clade 8-51 medoid: GCA 018267055 1
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1