AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 7-1
medoid: Deinococcus soli ex Cha et al 2016 GCA 001007995 1
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AAI clade 7-2
medoid: GCA 002746685 1
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AAI clade 7-3
medoid: Leptotrichia hofstadii DSM 21651 GCA 000428965 1
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AAI clade 7-4
medoid: GCA 016715195 1
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AAI clade 7-5
medoid: miga SS18A Bin 41 contigs
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AAI clade 7-5-1
medoid: miga SS18A Bin 41 contigs
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AAI clade 7-5-2
medoid: GCF 003003845 1
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AAI clade 7-5-3
medoid: GCF 002355455 1
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AAI clade 7-5-4
medoid: GCF 000317635 1
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AAI clade 7-5-5
medoid: GCA 015486145 1
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AAI clade 7-5-6
medoid: GCA 018716365 1
6 datasets: Pyramidobacter piscolens W5455 GCA 000177335 1 (AAI: 44.06%), GCA 012728165 1 (AAI: 52.85%), GCA 012728235 1 (AAI: 51.52%), GCA 018716365 1 (AAI: 100.0%), GCA 900545755 1 (AAI: 79.09%), and GCA 905235735 1 (AAI: 45.0%)
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AAI clade 7-5-7
medoid: GCF 003003995 1
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AAI clade 7-5-8
medoid: GCA 009778325 1
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AAI clade 7-5-9
medoid: GCA 004299065 1
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AAI clade 7-5-10
medoid: GCA 000992305 1
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AAI clade 7-5-11
medoid: asm GCA 001774375 1
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AAI clade 7-5-12
medoid: GCA 002476865 1
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AAI clade 7-5-13
medoid: GCA 016933955 1
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AAI clade 7-5-14
medoid: GCA 001603905 1
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AAI clade 7-5-15
medoid: GCA 001773295 1
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AAI clade 7-5-16
medoid: GCA 016861245 1
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AAI clade 7-5-17
medoid: GCA 017417215 1
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AAI clade 7-5-18
medoid: GCA 004298075 1
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AAI clade 7-5-19
medoid: GCA 018826075 1
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AAI clade 7-5-20
medoid: GCA 016218625 1
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AAI clade 7-5-21
medoid: GCA 011046175 1
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AAI clade 7-5-22
medoid: GCA 013823945 1
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AAI clade 7-5-23
medoid: GCA 002162095 1
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AAI clade 7-5-24
medoid: GCA 002292925 1
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AAI clade 7-5-25
medoid: miga DE18A TARA MED MAG 00069
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AAI clade 7-5-26
medoid: GCA 003650285 1
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AAI clade 7-5-27
medoid: miga AP18A bin 5
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AAI clade 7-5-28
medoid: GCA 002304935 1
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AAI clade 7-5-29
medoid: GCF 003570995 1
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AAI clade 7-5-30
medoid: GCA 002418595 1
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AAI clade 7-5-31
medoid: GCA 009838595 1
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AAI clade 7-5-32
medoid: GCA 012517765 1
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AAI clade 7-5-33
medoid: asm GCA 003265865 1
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AAI clade 7-5-34
medoid: GCA 900315925 1
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AAI clade 7-5-35
medoid: GCA 902761395 1
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AAI clade 7-5-36
medoid: GCA 009392515 1
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AAI clade 7-5-37
medoid: GCA 002783405 1
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AAI clade 7-5-38
medoid: GCA 002694895 1
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AAI clade 7-5-39
medoid: GCA 002705055 1
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AAI clade 7-5-40
medoid: GCA 002712125 1
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AAI clade 7-5-41
medoid: GCA 009392285 1
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AAI clade 7-5-42
medoid: GCA 002753745 1
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AAI clade 7-5-43
medoid: GCA 013791745 1
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AAI clade 7-5-44
medoid: GCA 003158175 1
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AAI clade 7-5-45
medoid: GCA 003140215 1
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AAI clade 7-5-46
medoid: GCA 003140855 1
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AAI clade 7-5-47
medoid: GCA 013333605 2
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AAI clade 7-5-48
medoid: asm GCA 900150375 1
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AAI clade 7-5-49
medoid: GCA 004525685 1
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AAI clade 7-5-50
medoid: GCA 011390275 1
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AAI clade 7-5-51
medoid: GCA 004297985 1
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AAI clade 7-5-52
medoid: GCA 011391455 1
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AAI clade 7-5-53
medoid: GCA 007571325 1
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AAI clade 7-5-54
medoid: GCF 000013225 1
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AAI clade 7-5-55
medoid: GCF 001693275 1
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AAI clade 7-5-56
medoid: GCA 017458805 1
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AAI clade 7-5-57
medoid: GCA 016715645 1
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AAI clade 7-5-58
medoid: GCA 018699495 1
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AAI clade 7-5-59
medoid: GCF 000277795 1
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AAI clade 7-5-60
medoid: GCF 015207985 1
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AAI clade 7-5-1
medoid: miga SS18A Bin 41 contigs
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AAI clade 7-6
medoid: GCA 903871235 1
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AAI clade 7-7
medoid: Microcystis aeruginosa NIES 843 GCA 000010625 1
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AAI clade 7-8
medoid: Gemmatimonas groenlandica GCA 013004105 1
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AAI clade 7-9
medoid: GCA 003213355 1
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AAI clade 7-10
medoid: GCA 003210915 1
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AAI clade 7-11
medoid: GCF 001592745 1
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AAI clade 7-12
medoid: GCA 003211205 1
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AAI clade 7-13
medoid: GCA 900761225 1
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AAI clade 7-14
medoid: GCA 902611225 1
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AAI clade 7-15
medoid: GCA 007133095 1
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AAI clade 7-16
medoid: asm GCA 001509265 1
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AAI clade 7-17
medoid: asm GCA 000993495 1
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AAI clade 7-18
medoid: GCA 016178535 1
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AAI clade 7-19
medoid: GCA 016212515 1
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AAI clade 7-20
medoid: GCA 902802945 1
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AAI clade 7-21
medoid: GCA 902763805 1
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AAI clade 7-22
medoid: GCA 902775595 1
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AAI clade 7-23
medoid: GCA 902774115 1
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AAI clade 7-24
medoid: GCF 002914585 1
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AAI clade 7-1
medoid: Deinococcus soli ex Cha et al 2016 GCA 001007995 1
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1