AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
• AAI clade 2 medoid: GCA 017448355 1
• AAI clade 3 medoid: GCA 017467885 1
• AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
• AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
• AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
• AAI clade 7 medoid: miga SS18A Bin 41 contigs
• AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
• AAI clade 9 medoid: GCA 900755995 1
• AAI clade 10 medoid: GCF 013113835 1
• AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
• AAI clade 12 medoid: GCA 016840965 1
• AAI clade 13 medoid: GCA 017622235 1
• AAI clade 14 medoid: GCA 904390925 1
• AAI clade 15 medoid: GCA 002375985 1
• AAI clade 16 medoid: GCA 003963015 1
• AAI clade 17 medoid: GCA 001771585 1
• AAI clade 18 medoid: GCF 018398895 1
• AAI clade 19 medoid: GCA 001295775 1
• AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
• AAI clade 21 medoid: GCF 009363535 1
• AAI clade 22 medoid: GCA 904374795 1
• AAI clade 23 medoid: GCA 903955385 1
• AAI clade 24 medoid: GCA 903887975 1
• AAI clade 25 medoid: GCA 902602655 1
• AAI clade 26 medoid: GCA 905235755 1
• AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
• AAI clade 28 medoid: GCA 903909555 1
• AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
• AAI clade 30 medoid: GCA 015061955 1
• AAI clade 31 medoid: GCA 000421065 1
• AAI clade 32 medoid: GCA 002438845 1
• AAI clade 33 medoid: GCA 003602665 1
• AAI clade 34 medoid: GCA 910585295 1
• AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
• AAI clade 36 medoid: GCA 017608235 1
• AAI clade 37 medoid: GCF 004332155 1
• AAI clade 38 medoid: GCA 009712635 1
• AAI clade 39 medoid: GCA 903926605 1
• AAI clade 40 medoid: GCA 017645955 1
• AAI clade 41 medoid: GCA 016793015 1
• AAI clade 42 medoid: GCA 900538305 1
• AAI clade 43 medoid: GCA 001002765 1
• AAI clade 44 medoid: GCA 902559935 1
• AAI clade 45 medoid: GCA 011371455 1
• AAI clade 46 medoid: GCA 000435515 1
• AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
• AAI clade 48 medoid: GCF 002835935 1
• AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
• AAI clade 50 medoid: GCA 002338255 1
• AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
• AAI clade 52 medoid: GCA 900167925 1
• AAI clade 53 medoid: GCA 900550065 1
• AAI clade 54 medoid: GCA 002314915 1
• AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
• AAI clade 56 medoid: GCA 005882335 1
• AAI clade 57 medoid: GCA 011065225 1
• AAI clade 58 medoid: GCA 016781775 1
• AAI clade 59 medoid: GCA 002362595 1
• AAI clade 60 medoid: GCA 016214555 1
• AAI clade 61 medoid: GCF 014764505 1
• AAI clade 62 medoid: GCA 902623215 1
• AAI clade 63 medoid: GCA 003514205 1
• AAI clade 64 medoid: GCF 009707955 1
• AAI clade 65 medoid: GCF 000348745 1
• AAI clade 66 medoid: GCA 900772425 1
• AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 67-1 medoid: Rhizobium anhuiense GCA 014638185 1
  • AAI clade 67-2 medoid: GCF 013170705 1
    • AAI clade 67-2-1 medoid: Aminobacter aminovorans GCA 900445235 1
      • AAI clade 67-2-1-1 medoid: Aminobacter aminovorans GCA 900445235 1
      • AAI clade 67-2-1-2 medoid: GCF 003590645 1
        • AAI clade 67-2-1-2-1 medoid: Mesorhizobium microcysteis GCA 008180155 1
        • AAI clade 67-2-1-2-2 medoid: Corticibacterium populi GCA 014652875 1
        • AAI clade 67-2-1-2-3 medoid: GCF 003590645 1
        • AAI clade 67-2-1-2-4 medoid: GCF 000526635 1
          2 datasets: Aquamicrobium zhengzhouense GCA 016124105 1 (AAI: 73.8%) and GCF 000526635 1 (AAI: 100.0%)
        • AAI clade 67-2-1-2-5 medoid: Aquibium oceanicum GCA 001889605 1
        • AAI clade 67-2-1-2-6 medoid: Mesorhizobium denitrificans GCA 003403035 1
        • AAI clade 67-2-1-2-7 medoid: Segnochrobactrum spirostomi GCA 009600605 1
        • AAI clade 67-2-1-2-8 medoid: GCF 000497755 1
        • AAI clade 67-2-1-2-9 medoid: GCF 012911015 1
      • AAI clade 67-2-1-3 medoid: GCA 016712715 1
    • AAI clade 67-2-2 medoid: Nitratireductor rhodophyticola GCA 019891355 1
    • AAI clade 67-2-3 medoid: GCF 013170705 1
    • AAI clade 67-2-4 medoid: GCA 000824785 1
    • AAI clade 67-2-5 medoid: Mesorhizobium temperatum GCA 002284575 1
    • AAI clade 67-2-6 medoid: Mesorhizobium loti GCA 003148495 1
    • AAI clade 67-2-7 medoid: GCA 002279935 1
    • AAI clade 67-2-8 medoid: GCA 902615805 1
    • AAI clade 67-2-9 medoid: GCF 016595235 1
  • AAI clade 67-3 medoid: GCF 002742635 1
  • AAI clade 67-4 medoid: GCF 000620505 1
  • AAI clade 67-5 medoid: GCA 902533965 1
  • AAI clade 67-6 medoid: GCA 015062495 1
  • AAI clade 67-7 medoid: GCA 902575725 1
• AAI clade 68 medoid: GCF 902506105 1
• AAI clade 69 medoid: GCF 013407275 1
• AAI clade 70 medoid: GCA 015494795 1
• AAI clade 71 medoid: GCA 016709995 1
• AAI clade 72 medoid: GCA 002493965 1
• AAI clade 73 medoid: GCA 009469665 1
• AAI clade 74 medoid: GCA 001799635 1
• AAI clade 75 medoid: GCA 016650235 1
• AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
• AAI clade 77 medoid: GCA 009903855 1
• AAI clade 78 medoid: GCA 019204045 1
• AAI clade 79 medoid: GCA 902783375 1
• AAI clade 80 medoid: GCF 000350105 1
• AAI clade 81 medoid: GCA 903901345 1
• AAI clade 82 medoid: GCA 015075425 1
• AAI clade 83 medoid: GCA 001508835 1
• AAI clade 84 medoid: GCA 017746715 1
• AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
• AAI clade 86 medoid: GCA 017438285 1
• AAI clade 87 medoid: GCA 002712945 1
• AAI clade 88 medoid: GCF 002214625 1
• AAI clade 89 medoid: GCA 902773215 1
• AAI clade 90 medoid: GCA 002723385 1
• AAI clade 91 medoid: GCA 019113455 1
• AAI clade 92 medoid: GCA 016286935 1
• AAI clade 93 medoid: GCA 003566775 1