AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
    • AAI clade 61-1 medoid: GCA 014695345 1
      • AAI clade 61-1-1 medoid: GCF 003846445 1
      • AAI clade 61-1-2 medoid: Prochlorothrix hollandica PCC 9006 CALU 1027 GCA 000332315 1
      • AAI clade 61-1-3 medoid: Thermoleptolyngbya sichuanensis PKUAC SCTA183 GCA 013177315 1
      • AAI clade 61-1-4 medoid: Gloeomargarita lithophora Alchichica D10 GCA 001870225 1
      • AAI clade 61-1-5 medoid: GCA 000733415 1
      • AAI clade 61-1-6 medoid: GCA 002340255 1
      • AAI clade 61-1-7 medoid: GCA 012033255 1
      • AAI clade 61-1-8 medoid: GCF 016888135 1
      • AAI clade 61-1-9 medoid: GCA 012031415 1
      • AAI clade 61-1-10 medoid: GCA 012031475 1
      • AAI clade 61-1-11 medoid: GCA 012032525 1
      • AAI clade 61-1-12 medoid: GCA 012034615 1
      • AAI clade 61-1-13 medoid: GCA 012034795 1
      • AAI clade 61-1-14 medoid: GCA 014324065 1
      • AAI clade 61-1-15 medoid: GCF 002215035 1
      • AAI clade 61-1-16 medoid: GCA 015207365 1
        1 dataset: GCA 015207365 1 (AAI: 100.0%)
      • AAI clade 61-1-17 medoid: GCA 015272205 1
      • AAI clade 61-1-18 medoid: GCA 015272465 1
      • AAI clade 61-1-19 medoid: GCF 014764505 1
      • AAI clade 61-1-20 medoid: GCA 902806435 1
      • AAI clade 61-1-21 medoid: GCA 903897715 1
      • AAI clade 61-1-22 medoid: GCF 000317045 1
      • AAI clade 61-1-23 medoid: GCF 000332275 1
      • AAI clade 61-1-24 medoid: GCF 001746915 1
      • AAI clade 61-1-25 medoid: GCF 001939115 1
      • AAI clade 61-1-26 medoid: GCF 014695385 1
      • AAI clade 61-1-27 medoid: GCF 014695575 1
      • AAI clade 61-1-28 medoid: GCF 014696065 1
      • AAI clade 61-1-29 medoid: miga WB18A mgm4762890 3 050 upload
      • AAI clade 61-1-30 medoid: miga ZQ19A BG 098
      • AAI clade 61-1-31 medoid: miga ZQ19A BG 329
    • AAI clade 61-2 medoid: GCF 003003925 1
    • AAI clade 61-3 medoid: Gloeobacter violaceus PCC 7421 GCA 000011385 1
    • AAI clade 61-4 medoid: GCA 014695195 1
    • AAI clade 61-5 medoid: GCF 900009265 2
    • AAI clade 61-6 medoid: GCF 014695175 1
    • AAI clade 61-7 medoid: GCF 003003795 1
    • AAI clade 61-8 medoid: GCF 014279895 1
    • AAI clade 61-9 medoid: GCF 008386235 1
    • AAI clade 61-10 medoid: GCF 000238775 1
    • AAI clade 61-11 medoid: GCF 014695375 1
    • AAI clade 61-12 medoid: GCA 011390515 1
    • AAI clade 61-13 medoid: Adonisia turfae CCMR0081 GCA 011009555 1
    • AAI clade 61-14 medoid: GCA 016882385 1
    • AAI clade 61-15 medoid: GCF 014696135 1
    • AAI clade 61-16 medoid: GCA 010672525 1
    • AAI clade 61-17 medoid: GCF 000179235 2
    • AAI clade 61-18 medoid: GCF 014279875 1
    • AAI clade 61-19 medoid: GCF 015207105 1
    • AAI clade 61-20 medoid: GCA 003249015 1
    • AAI clade 61-21 medoid: GCF 014698235 1
    • AAI clade 61-22 medoid: GCA 009840445 1
    • AAI clade 61-23 medoid: GCA 003280985 1
    • AAI clade 61-24 medoid: GCA 003280265 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1