AAI clade 5-11 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
AAI clade 2 medoid: GCA 017448355 1
AAI clade 3 medoid: GCA 017467885 1
AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
- AAI clade 5-1 medoid: GCF 014451325 1
- AAI clade 5-2 medoid: Streptomyces durocortorensis GCA 016901035 1
- AAI clade 5-3 medoid: Streptomyces platensis GCA 002119195 1
- AAI clade 5-4 medoid: Streptomyces tricolor GCA 002155905 1
- AAI clade 5-5 medoid: Nocardia araoensis NBRC 100135 GCA 000308435 1
- AAI clade 5-6 medoid: Amycolatopsis decaplanina DSM 44594 GCA 000342005 1
- AAI clade 5-7 medoid: GCF 001836165 1
- AAI clade 5-8 medoid: GCF 900199205 1
- AAI clade 5-9 medoid: GCF 006715225 1
- AAI clade 5-10 medoid: GCF 900323885 1
- AAI clade 5-11 medoid: GCA 002529455 1
  - AAI clade 5-11-1 medoid: Nocardiopsis alborubida NBRC 13392 GCA 001552695 1
  - AAI clade 5-11-2 medoid: Nocardiopsis ganjiahuensis DSM 45031 GCA 000341085 1
  - AAI clade 5-11-3 medoid: Nocardiopsis halophila DSM 44494 GCA 000341245 1
  - AAI clade 5-11-4 medoid: Nocardiopsis mwathae GCA 014201195 1
  - AAI clade 5-11-5 medoid: Nocardiopsis kunsanensis DSM 44524 GCA 000340965 1
  - AAI clade 5-11-6 medoid: Streptomonospora nanhaiensis GCA 019733275 1
  - AAI clade 5-11-7 medoid: Nocardiopsis sinuspersici GCA 013410445 1
  - AAI clade 5-11-8 medoid: Thermobifida alba GCA 023208015 1
  - AAI clade 5-11-9 medoid: Allosalinactinospora lopnorensis GCA 000981225 1
  - AAI clade 5-11-10 medoid: Lipingzhangella halophila GCA 014203805 1
  - AAI clade 5-11-11 medoid: Marinactinospora thermotolerans DSM 45154 GCA 900167435 1
  - AAI clade 5-11-12 medoid: Nocardiopsis aegyptia GCA 013410755 1
  - AAI clade 5-11-13 medoid: Nocardiopsis algeriensis GCA 014203695 1
  - AAI clade 5-11-14 medoid: Nocardiopsis listeri NBRC 13360 GCA 001570765 1
  - AAI clade 5-11-15 medoid: Nocardiopsis potens DSM 45234 GCA 000341105 1
  - AAI clade 5-11-16 medoid: Nocardiopsis coralli GCA 014892575 1
  - AAI clade 5-11-17 medoid: Nocardiopsis flavescens GCA 900141985 1
  - AAI clade 5-11-18 medoid: GCF 003386285 1
  - AAI clade 5-11-19 medoid: Spinactinospora alkalitolerans GCA 013408795 1
  - AAI clade 5-11-20 medoid: Streptomonospora salina GCA 014204715 1
  - AAI clade 5-11-21 medoid: Spiractinospora alimapuensis GCA 018437505 1
  - AAI clade 5-11-22 medoid: Actinorugispora endophytica GCA 004363075 1
  - AAI clade 5-11-23 medoid: Allonocardiopsis opalescens GCA 003002095 1
  - AAI clade 5-11-24 medoid: Haloactinospora alba GCA 006717075 1
  - AAI clade 5-11-25 medoid: Marinitenerispora sediminis GCA 003336425 1
  - AAI clade 5-11-26 medoid: Murinocardiopsis flavida GCA 003014485 1
  - AAI clade 5-11-27 medoid: Nocardiopsis trehalosi NBRC 14201 GCA 001552555 1
  - AAI clade 5-11-28 medoid: GCF 009728995 1
  - AAI clade 5-11-29 medoid: Thermobifida fusca NBRC 14071 JCM 3263 GCA 001592045 1
  - AAI clade 5-11-30 medoid: GCA 003725585 1
  - AAI clade 5-11-31 medoid: GCA 019115445 1
  - AAI clade 5-11-32 medoid: GCF 000424625 1
  - AAI clade 5-11-33 medoid: GCF 000515115 1
- AAI clade 5-12 medoid: Lentzea atacamensis GCA 003269295 1
- AAI clade 5-13 medoid: GCF 900143215 1
- AAI clade 5-14 medoid: GCF 008327685 1
- AAI clade 5-15 medoid: GCF 002979475 1
- AAI clade 5-16 medoid: asm GCA 000754525 1
AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
AAI clade 7 medoid: miga SS18A Bin 41 contigs
AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
AAI clade 9 medoid: GCA 900755995 1
AAI clade 10 medoid: GCF 013113835 1
AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
AAI clade 12 medoid: GCA 016840965 1
AAI clade 13 medoid: GCA 017622235 1
AAI clade 14 medoid: GCA 904390925 1
AAI clade 15 medoid: GCA 002375985 1
AAI clade 16 medoid: GCA 003963015 1
AAI clade 17 medoid: GCA 001771585 1
AAI clade 18 medoid: GCF 018398895 1
AAI clade 19 medoid: GCA 001295775 1
AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
AAI clade 21 medoid: GCF 009363535 1
AAI clade 22 medoid: GCA 904374795 1
AAI clade 23 medoid: GCA 903955385 1
AAI clade 24 medoid: GCA 903887975 1
AAI clade 25 medoid: GCA 902602655 1
AAI clade 26 medoid: GCA 905235755 1
AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
AAI clade 28 medoid: GCA 903909555 1
AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
AAI clade 30 medoid: GCA 015061955 1
AAI clade 31 medoid: GCA 000421065 1
AAI clade 32 medoid: GCA 002438845 1
AAI clade 33 medoid: GCA 003602665 1
AAI clade 34 medoid: GCA 910585295 1
AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
AAI clade 36 medoid: GCA 017608235 1
AAI clade 37 medoid: GCF 004332155 1
AAI clade 38 medoid: GCA 009712635 1
AAI clade 39 medoid: GCA 903926605 1
AAI clade 40 medoid: GCA 017645955 1
AAI clade 41 medoid: GCA 016793015 1
AAI clade 42 medoid: GCA 900538305 1
AAI clade 43 medoid: GCA 001002765 1
AAI clade 44 medoid: GCA 902559935 1
AAI clade 45 medoid: GCA 011371455 1
AAI clade 46 medoid: GCA 000435515 1
AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
AAI clade 48 medoid: GCF 002835935 1
AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
AAI clade 50 medoid: GCA 002338255 1
AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
AAI clade 52 medoid: GCA 900167925 1
AAI clade 53 medoid: GCA 900550065 1
AAI clade 54 medoid: GCA 002314915 1
AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
AAI clade 56 medoid: GCA 005882335 1
AAI clade 57 medoid: GCA 011065225 1
AAI clade 58 medoid: GCA 016781775 1
AAI clade 59 medoid: GCA 002362595 1
AAI clade 60 medoid: GCA 016214555 1
AAI clade 61 medoid: GCF 014764505 1
AAI clade 62 medoid: GCA 902623215 1
AAI clade 63 medoid: GCA 003514205 1
AAI clade 64 medoid: GCF 009707955 1
AAI clade 65 medoid: GCF 000348745 1
AAI clade 66 medoid: GCA 900772425 1
AAI clade 67 medoid: GCF 003590645 1
AAI clade 68 medoid: GCF 902506105 1
AAI clade 69 medoid: GCF 013407275 1
AAI clade 70 medoid: GCA 015494795 1
AAI clade 71 medoid: GCA 016709995 1
AAI clade 72 medoid: GCA 002493965 1
AAI clade 73 medoid: GCA 009469665 1
AAI clade 74 medoid: GCA 001799635 1
AAI clade 75 medoid: GCA 016650235 1
AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
AAI clade 77 medoid: GCA 009903855 1
AAI clade 78 medoid: GCA 019204045 1
AAI clade 79 medoid: GCA 902783375 1
AAI clade 80 medoid: GCF 000350105 1
AAI clade 81 medoid: GCA 903901345 1
AAI clade 82 medoid: GCA 015075425 1
AAI clade 83 medoid: GCA 001508835 1
AAI clade 84 medoid: GCA 017746715 1
AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
AAI clade 86 medoid: GCA 017438285 1
AAI clade 87 medoid: GCA 002712945 1
AAI clade 88 medoid: GCF 002214625 1
AAI clade 89 medoid: GCA 902773215 1
AAI clade 90 medoid: GCA 002723385 1
AAI clade 91 medoid: GCA 019113455 1
AAI clade 92 medoid: GCA 016286935 1
AAI clade 93 medoid: GCA 003566775 1

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