AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 45-1
medoid: GCF 001632845 1
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AAI clade 45-2
medoid: Marichromatium gracile GCA 004343155 1
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AAI clade 45-3
medoid: Spiribacter curvatus GCA 000485905 1
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AAI clade 45-4
medoid: Acidihalobacter prosperus GCA 000754095 2
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AAI clade 45-5
medoid: Allochromatium humboldtianum GCA 013385175 1
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AAI clade 45-6
medoid: GCA 002162705 1
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AAI clade 45-7
medoid: Ectothiorhodospira shaposhnikovii GCA 022227765 1
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AAI clade 45-8
medoid: Halochromatium glycolicum GCA 016584085 1
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AAI clade 45-9
medoid: Methylobacter tundripaludum SV96 GCA 000190755 3
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AAI clade 45-10
medoid: GCA 002696735 1
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AAI clade 45-11
medoid: Methylophaga aminisulfidivorans MP GCA 000214595 2
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AAI clade 45-12
medoid: Alkalilimnicola ehrlichii MLHE 1 GCA 000014785 1
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AAI clade 45-13
medoid: Sedimenticola selenatireducens DSM 17993 GCA 000428045 1
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AAI clade 45-14
medoid: Thioalkalivibrio sulfidiphilus HL EbGr7 GCA 000021985 1
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AAI clade 45-15
medoid: Thiocapsa rosea GCA 003634315 1
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AAI clade 45-16
medoid: Thiohalomonas denitrificans GCA 900102855 1
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AAI clade 45-17
medoid: GCA 015490535 1
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AAI clade 45-18
medoid: GCA 012962365 1
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AAI clade 45-19
medoid: Thiocystis minor GCA 016653465 1
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AAI clade 45-20
medoid: GCA 002869685 1
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AAI clade 45-21
medoid: GCF 002005105 1
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AAI clade 45-22
medoid: Nitrosococcus wardiae GCA 004421105 1
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AAI clade 45-23
medoid: GCA 007116035 1
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AAI clade 45-24
medoid: GCA 000785145 2
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AAI clade 45-25
medoid: GCA 015494165 1
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AAI clade 45-26
medoid: GCA 016844485 1
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AAI clade 45-26-1
medoid: Methylohalomonas lacus GCA 024808875 1
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AAI clade 45-26-2
medoid: GCA 003250975 1
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AAI clade 45-26-3
medoid: GCA 016198885 1
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AAI clade 45-26-4
medoid: GCA 002698845 1
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AAI clade 45-26-5
medoid: GCA 002389045 1
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AAI clade 45-26-6
medoid: GCA 004297165 1
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AAI clade 45-26-7
medoid: GCA 004356415 1
1 dataset: GCA 004356415 1 (AAI: 100.0%)
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AAI clade 45-26-8
medoid: GCA 018676275 1
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AAI clade 45-26-9
medoid: GCA 012270695 1
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AAI clade 45-26-10
medoid: GCA 015661095 1
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AAI clade 45-26-1
medoid: Methylohalomonas lacus GCA 024808875 1
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AAI clade 45-27
medoid: GCA 001785195 1
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AAI clade 45-28
medoid: Thiogranum longum GCA 004339085 1
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AAI clade 45-29
medoid: GCA 002840095 1
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AAI clade 45-30
medoid: GCF 002356355 1
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AAI clade 45-31
medoid: asm GCA 900491275 1
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AAI clade 45-32
medoid: miga ZQ19A BG 428
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AAI clade 45-33
medoid: GCA 016191235 1
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AAI clade 45-34
medoid: GCF 900092655 1
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AAI clade 45-35
medoid: GCA 003676145 1
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AAI clade 45-36
medoid: GCA 002733505 1
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AAI clade 45-37
medoid: GCA 011523045 1
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AAI clade 45-38
medoid: GCA 016699715 1
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AAI clade 45-39
medoid: GCA 015488295 1
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AAI clade 45-40
medoid: asm GCA 900491265 1
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AAI clade 45-41
medoid: asm GCA 900491075 1
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AAI clade 45-42
medoid: asm GCA 900491255 1
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AAI clade 45-43
medoid: asm GCA 001786655 1
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AAI clade 45-44
medoid: GCA 009937445 1
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AAI clade 45-45
medoid: GCA 002688175 1
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AAI clade 45-46
medoid: GCF 002021095 1
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AAI clade 45-47
medoid: GCA 002711905 1
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AAI clade 45-48
medoid: GCA 018672825 1
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AAI clade 45-49
medoid: GCA 007123575 1
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AAI clade 45-50
medoid: GCA 014239255 1
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AAI clade 45-51
medoid: GCA 016744295 1
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AAI clade 45-52
medoid: GCF 011058255 1
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AAI clade 45-53
medoid: GCA 003058525 1
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AAI clade 45-54
medoid: GCA 016744065 1
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AAI clade 45-55
medoid: asm GCA 003646245 1
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AAI clade 45-56
medoid: GCA 016756835 1
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AAI clade 45-57
medoid: GCA 016763355 1
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AAI clade 45-58
medoid: GCA 018667355 1
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AAI clade 45-59
medoid: GCA 903835265 1
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AAI clade 45-60
medoid: GCA 018435665 1
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AAI clade 45-61
medoid: GCF 012044895 1
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AAI clade 45-62
medoid: GCA 011051755 1
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AAI clade 45-63
medoid: GCA 016744995 1
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AAI clade 45-64
medoid: miga ZQ19A BG 145
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AAI clade 45-65
medoid: GCA 013349825 1
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AAI clade 45-66
medoid: GCA 016218375 1
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AAI clade 45-67
medoid: GCA 018664975 1
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AAI clade 45-68
medoid: miga PS19A HMP 2012 SRS045197 bin 35
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AAI clade 45-1
medoid: GCF 001632845 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1