AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
    • AAI clade 45-1 medoid: GCF 001632845 1
    • AAI clade 45-2 medoid: Marichromatium gracile GCA 004343155 1
    • AAI clade 45-3 medoid: Spiribacter curvatus GCA 000485905 1
    • AAI clade 45-4 medoid: Acidihalobacter prosperus GCA 000754095 2
    • AAI clade 45-5 medoid: Allochromatium humboldtianum GCA 013385175 1
    • AAI clade 45-6 medoid: GCA 002162705 1
    • AAI clade 45-7 medoid: Ectothiorhodospira shaposhnikovii GCA 022227765 1
    • AAI clade 45-8 medoid: Halochromatium glycolicum GCA 016584085 1
    • AAI clade 45-9 medoid: Methylobacter tundripaludum SV96 GCA 000190755 3
    • AAI clade 45-10 medoid: GCA 002696735 1
    • AAI clade 45-11 medoid: Methylophaga aminisulfidivorans MP GCA 000214595 2
    • AAI clade 45-12 medoid: Alkalilimnicola ehrlichii MLHE 1 GCA 000014785 1
    • AAI clade 45-13 medoid: Sedimenticola selenatireducens DSM 17993 GCA 000428045 1
    • AAI clade 45-14 medoid: Thioalkalivibrio sulfidiphilus HL EbGr7 GCA 000021985 1
    • AAI clade 45-15 medoid: Thiocapsa rosea GCA 003634315 1
    • AAI clade 45-16 medoid: Thiohalomonas denitrificans GCA 900102855 1
    • AAI clade 45-17 medoid: GCA 015490535 1
    • AAI clade 45-18 medoid: GCA 012962365 1
    • AAI clade 45-19 medoid: Thiocystis minor GCA 016653465 1
    • AAI clade 45-20 medoid: GCA 002869685 1
      • AAI clade 45-20-1 medoid: GCA 002869685 1
      • AAI clade 45-20-2 medoid: GCA 002747825 1
      • AAI clade 45-20-3 medoid: GCA 003558985 1
      • AAI clade 45-20-4 medoid: GCA 006226895 1
      • AAI clade 45-20-5 medoid: GCA 009778235 1
        1 dataset: GCA 009778235 1 (AAI: 100.0%)
      • AAI clade 45-20-6 medoid: GCA 009783025 1
      • AAI clade 45-20-7 medoid: GCA 014859615 1
      • AAI clade 45-20-8 medoid: GCA 017861215 1
      • AAI clade 45-20-9 medoid: GCA 903857795 1
    • AAI clade 45-21 medoid: GCF 002005105 1
    • AAI clade 45-22 medoid: Nitrosococcus wardiae GCA 004421105 1
    • AAI clade 45-23 medoid: GCA 007116035 1
    • AAI clade 45-24 medoid: GCA 000785145 2
    • AAI clade 45-25 medoid: GCA 015494165 1
    • AAI clade 45-26 medoid: GCA 016844485 1
    • AAI clade 45-27 medoid: GCA 001785195 1
    • AAI clade 45-28 medoid: Thiogranum longum GCA 004339085 1
    • AAI clade 45-29 medoid: GCA 002840095 1
    • AAI clade 45-30 medoid: GCF 002356355 1
    • AAI clade 45-31 medoid: asm GCA 900491275 1
    • AAI clade 45-32 medoid: miga ZQ19A BG 428
    • AAI clade 45-33 medoid: GCA 016191235 1
    • AAI clade 45-34 medoid: GCF 900092655 1
    • AAI clade 45-35 medoid: GCA 003676145 1
    • AAI clade 45-36 medoid: GCA 002733505 1
    • AAI clade 45-37 medoid: GCA 011523045 1
    • AAI clade 45-38 medoid: GCA 016699715 1
    • AAI clade 45-39 medoid: GCA 015488295 1
    • AAI clade 45-40 medoid: asm GCA 900491265 1
    • AAI clade 45-41 medoid: asm GCA 900491075 1
    • AAI clade 45-42 medoid: asm GCA 900491255 1
    • AAI clade 45-43 medoid: asm GCA 001786655 1
    • AAI clade 45-44 medoid: GCA 009937445 1
    • AAI clade 45-45 medoid: GCA 002688175 1
    • AAI clade 45-46 medoid: GCF 002021095 1
    • AAI clade 45-47 medoid: GCA 002711905 1
    • AAI clade 45-48 medoid: GCA 018672825 1
    • AAI clade 45-49 medoid: GCA 007123575 1
    • AAI clade 45-50 medoid: GCA 014239255 1
    • AAI clade 45-51 medoid: GCA 016744295 1
    • AAI clade 45-52 medoid: GCF 011058255 1
    • AAI clade 45-53 medoid: GCA 003058525 1
    • AAI clade 45-54 medoid: GCA 016744065 1
    • AAI clade 45-55 medoid: asm GCA 003646245 1
    • AAI clade 45-56 medoid: GCA 016756835 1
    • AAI clade 45-57 medoid: GCA 016763355 1
    • AAI clade 45-58 medoid: GCA 018667355 1
    • AAI clade 45-59 medoid: GCA 903835265 1
    • AAI clade 45-60 medoid: GCA 018435665 1
    • AAI clade 45-61 medoid: GCF 012044895 1
    • AAI clade 45-62 medoid: GCA 011051755 1
    • AAI clade 45-63 medoid: GCA 016744995 1
    • AAI clade 45-64 medoid: miga ZQ19A BG 145
    • AAI clade 45-65 medoid: GCA 013349825 1
    • AAI clade 45-66 medoid: GCA 016218375 1
    • AAI clade 45-67 medoid: GCA 018664975 1
    • AAI clade 45-68 medoid: miga PS19A HMP 2012 SRS045197 bin 35
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1