AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 42-1
medoid: GCA 900550055 1
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AAI clade 42-2
medoid: GCA 900770865 1
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AAI clade 42-3
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-3-1
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-3-1-1
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-3-1-1-1
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-3-1-1-2
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-1
medoid: Collinsella bouchesdurhonensis GCA 900155365 1
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AAI clade 42-3-1-1-2-2
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-1
medoid: GCA 002437815 1
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AAI clade 42-3-1-1-2-2-2
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-2
medoid: GCA 900549455 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-3
medoid: GCA 900549535 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-4
medoid: GCA 900551635 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-5
medoid: GCA 900553415 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-6
medoid: GCA 900554595 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-7
medoid: GCA 900764955 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-8
medoid: GCA 905208345 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-9
medoid: GCA 905216075 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-10
medoid: miga PS19A CosteaPI 2017 SID713B052 11 0 0 bin 25
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-11
medoid: miga PS19A IjazUZ 2017 S33 a WGS megahit bin 13
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-12
medoid: miga PS19A SchirmerM 2016 G88790 bin 10
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-13
medoid: miga PS19A VatanenT 2016 G69163 bin 6
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-14
medoid: miga PS19A ZellerG 2014 CCIS44743950ST 4 0 bin 54
1 dataset: miga PS19A ZellerG 2014 CCIS44743950ST 4 0 bin 54 (AAI: 100.0%)
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-2
medoid: miga PS19A KarlssonFH 2013 S458 bin 54
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-2
medoid: GCA 900757265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-3
medoid: miga PS19A HanniganGD 2017 MG100184 bin 3
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-4
medoid: miga PS19A SchirmerM 2016 G88958 bin 7
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-5
medoid: miga PS19A XieH 2016 YSZC12003 37331 bin 69
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-2
medoid: miga PS19A ZellerG 2014 CCIS22958137ST 20 0 bin 4
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-2
medoid: miga PS19A HanniganGD 2017 MG100189 bin 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-3
medoid: miga PS19A ZellerG 2014 CCIS21278152ST 4 0 bin 58
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-2
medoid: GCA 900554655 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-3
medoid: miga PS19A GeversD 2014 SKBSTL013 bin 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-4
medoid: miga PS19A LiJ 2014 MH0396 bin 53
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-5
medoid: miga PS19A RaymondF 2016 P2E0 bin 78
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-6
medoid: miga PS19A XieH 2016 YSZC12003 35562 bin 35
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-7
medoid: miga PS19A ZeeviD 2015 PNP Main 226 megahit bin 29
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-2
medoid: miga PS19A SchirmerM 2016 G88898 bin 28
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-2
medoid: miga PS19A SchirmerM 2016 G89013 bin 24
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-2
medoid: miga PS19A LiJ 2014 MH0387 bin 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-2
medoid: GCA 900553345 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-3
medoid: GCA 900752345 1
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AAI clade 42-3-1-1-2-2-2-1-1-1-4
medoid: miga PS19A LeChatelierE 2013 MH0197 bin 47
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AAI clade 42-3-1-1-2-2-2-1-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-1-2
medoid: GCA 900556675 1
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AAI clade 42-3-1-1-2-2-2-1-1-3
medoid: miga PS19A HanniganGD 2017 MG100162 bin 2
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AAI clade 42-3-1-1-2-2-2-1-1-4
medoid: miga PS19A LouisS 2016 AS61 24 bin 4
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AAI clade 42-3-1-1-2-2-2-1-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-1-2
medoid: GCA 900547765 1
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AAI clade 42-3-1-1-2-2-2-1-3
medoid: GCA 900556705 1
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AAI clade 42-3-1-1-2-2-2-1-4
medoid: miga PS19A LiJ 2017 H2F413935 bin 33
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AAI clade 42-3-1-1-2-2-2-1-5
medoid: miga PS19A ZeeviD 2015 PNP Main 615 megahit bin 17
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AAI clade 42-3-1-1-2-2-2-1-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-2-2
medoid: miga PS19A CosteaPI 2017 SID713A058 11 0 0 bin 42
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AAI clade 42-3-1-1-2-2-2-3
medoid: miga PS19A HeQ 2017 SZAXPI029594 136 bin 24
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AAI clade 42-3-1-1-2-2-2-4
medoid: miga PS19A LiJ 2014 MH0238 bin 40
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AAI clade 42-3-1-1-2-2-2-5
medoid: miga PS19A QinJ 2012 NOF005 bin 4
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AAI clade 42-3-1-1-2-2-2-6
medoid: miga PS19A SchirmerM 2016 G88802 bin 8
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AAI clade 42-3-1-1-2-2-2-7
medoid: miga PS19A ZeeviD 2015 PNP Main 352 megahit bin 24
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AAI clade 42-3-1-1-2-2-2-1
medoid: GCA 900548265 1
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AAI clade 42-3-1-1-2-2-3
medoid: miga PS19A ChengpingW 2017 AS127raw bin 45
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AAI clade 42-3-1-1-2-2-4
medoid: miga PS19A SmitsSA 2017 TZ 21460 megahit bin 3
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AAI clade 42-3-1-1-2-2-1
medoid: GCA 002437815 1
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AAI clade 42-3-1-1-2-1
medoid: Collinsella bouchesdurhonensis GCA 900155365 1
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AAI clade 42-3-1-1-1
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-3-1-2
medoid: GCF 002159765 1
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AAI clade 42-3-1-1
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-3-2
medoid: GCA 900551665 1
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AAI clade 42-3-1
medoid: Collinsella aerofaciens GCA 900461335 1
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AAI clade 42-4
medoid: GCA 015259035 1
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AAI clade 42-5
medoid: GCA 900553605 1
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AAI clade 42-6
medoid: GCA 004348925 1
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AAI clade 42-1
medoid: GCA 900550055 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1