AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
    • AAI clade 41-1 medoid: Gimesia maris GCA 008298035 1
    • AAI clade 41-2 medoid: Paludisphaera soli GCA 011064595 1
    • AAI clade 41-3 medoid: GCA 002690755 1
    • AAI clade 41-4 medoid: GCA 002698965 1
    • AAI clade 41-5 medoid: GCA 007753675 1
    • AAI clade 41-6 medoid: asm GCA 003669395 1
    • AAI clade 41-7 medoid: GCA 002713555 1
    • AAI clade 41-8 medoid: asm GCA 001304275 1
      • AAI clade 41-8-1 medoid: GCA 002311745 1
      • AAI clade 41-8-2 medoid: GCA 016930745 1
      • AAI clade 41-8-3 medoid: Sedimentisphaera cyanobacteriorum GCA 001997385 1
      • AAI clade 41-8-4 medoid: GCA 005223045 1
      • AAI clade 41-8-5 medoid: GCA 002049885 1
      • AAI clade 41-8-6 medoid: GCA 001303695 1
      • AAI clade 41-8-7 medoid: GCA 001603075 1
      • AAI clade 41-8-8 medoid: GCA 002839495 1
      • AAI clade 41-8-9 medoid: GCA 001824635 1
      • AAI clade 41-8-10 medoid: GCA 002084585 1
      • AAI clade 41-8-11 medoid: GCA 018055905 1
      • AAI clade 41-8-12 medoid: GCA 002338715 1
      • AAI clade 41-8-13 medoid: GCA 002347125 1
      • AAI clade 41-8-14 medoid: GCA 002482415 1
      • AAI clade 41-8-15 medoid: GCA 003170415 1
      • AAI clade 41-8-16 medoid: GCA 003152975 1
      • AAI clade 41-8-17 medoid: GCA 003485185 1
        • AAI clade 41-8-17-1 medoid: GCA 003485185 1
        • AAI clade 41-8-17-2 medoid: GCA 003551645 1
        • AAI clade 41-8-17-3 medoid: GCA 016929245 1
          4 datasets: GCA 003644335 1 (AAI: 51.34%), GCA 009908915 1 (AAI: 51.18%), GCA 016929245 1 (AAI: 100.0%), and GCA 016931655 1 (AAI: 62.87%)
        • AAI clade 41-8-17-4 medoid: GCA 016782885 1
        • AAI clade 41-8-17-5 medoid: GCA 018644725 1
        • AAI clade 41-8-17-6 medoid: asm GCA 003819915 1
      • AAI clade 41-8-18 medoid: GCA 903914415 1
      • AAI clade 41-8-19 medoid: asm GCA 001303605 1
      • AAI clade 41-8-20 medoid: GCA 003553245 1
      • AAI clade 41-8-21 medoid: GCA 018003015 1
      • AAI clade 41-8-22 medoid: GCA 003567095 1
      • AAI clade 41-8-23 medoid: GCA 900696465 1
      • AAI clade 41-8-24 medoid: GCA 016208685 1
      • AAI clade 41-8-25 medoid: GCA 003644205 1
      • AAI clade 41-8-26 medoid: GCA 018056925 1
    • AAI clade 41-9 medoid: GCA 018701395 1
    • AAI clade 41-10 medoid: GCA 900696545 1
    • AAI clade 41-11 medoid: GCA 016794565 1
    • AAI clade 41-12 medoid: asm GCA 003671145 1
    • AAI clade 41-13 medoid: miga ZQ19A BG 020
    • AAI clade 41-14 medoid: GCA 903898755 1
    • AAI clade 41-15 medoid: GCA 017466305 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1