AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
    • AAI clade 37-1 medoid: Salegentibacter agarivorans GCA 900113135 1
    • AAI clade 37-2 medoid: Algibacter marinivivus GCA 003143755 1
    • AAI clade 37-3 medoid: Olleya marilimosa CAM030 GCA 000518485 1
    • AAI clade 37-4 medoid: GCF 017313105 1
    • AAI clade 37-5 medoid: miga PS19A HMP 2012 SRS018573 bin 26
    • AAI clade 37-6 medoid: GCF 003815655 1
    • AAI clade 37-7 medoid: Aequorivita aquimaris GCA 001573155 1
    • AAI clade 37-8 medoid: GCF 018860365 1
    • AAI clade 37-9 medoid: GCA 002378465 1
    • AAI clade 37-10 medoid: Muricauda parva GCA 900215465 1
    • AAI clade 37-11 medoid: GCF 000212355 1
    • AAI clade 37-12 medoid: Gramella gaetbulicola GCA 003054225 1
    • AAI clade 37-13 medoid: Galbibacter mesophilus GCA 023721415 1
    • AAI clade 37-14 medoid: GCF 004104075 1
    • AAI clade 37-15 medoid: Hanstruepera marina GCA 019880635 1
    • AAI clade 37-16 medoid: Mesonia mobilis DSM 19841 GCA 000423405 1
    • AAI clade 37-17 medoid: GCA 011525035 1
    • AAI clade 37-18 medoid: Salinimicrobium sediminis GCA 900215295 1
    • AAI clade 37-19 medoid: GCF 013403915 1
    • AAI clade 37-20 medoid: Aquimarina megaterium XH134 GCA 000520975 1
    • AAI clade 37-21 medoid: Maribacter stanieri GCA 900112245 1
    • AAI clade 37-22 medoid: Maribacter polysiphoniae GCA 014673435 1
    • AAI clade 37-23 medoid: Nonlabens ulvanivorans GCA 000732625 1
    • AAI clade 37-24 medoid: Gelidibacter pelagius GCA 017581925 1
    • AAI clade 37-25 medoid: Croceimicrobium hydrocarbonivorans GCA 014524565 1
    • AAI clade 37-26 medoid: GCA 007134085 1
    • AAI clade 37-27 medoid: Flavihalobacter algicola GCA 014526325 1
    • AAI clade 37-28 medoid: Zobellia barbeyronii GCA 018603515 1
    • AAI clade 37-29 medoid: miga ZQ19A BG 370
    • AAI clade 37-30 medoid: miga ZQ19A BG 632
    • AAI clade 37-31 medoid: GCF 000403785 1
    • AAI clade 37-32 medoid: GCA 902529365 1
    • AAI clade 37-33 medoid: GCA 006383075 2
    • AAI clade 37-34 medoid: GCA 002631855 1
    • AAI clade 37-35 medoid: Confluentibacter lentus GCA 002806995 1
    • AAI clade 37-36 medoid: Pukyongia salina GCA 002966125 1
    • AAI clade 37-37 medoid: Psychroflexus longus GCA 020164595 1
    • AAI clade 37-38 medoid: GCA 002722255 1
    • AAI clade 37-39 medoid: GCA 902168135 1
    • AAI clade 37-40 medoid: Ornithobacterium rhinotracheale DSM 15997 GCA 000265465 1
    • AAI clade 37-41 medoid: GCA 002238805 1
    • AAI clade 37-42 medoid: GCA 016780365 1
    • AAI clade 37-43 medoid: GCA 905479325 1
    • AAI clade 37-44 medoid: GCF 003143775 1
    • AAI clade 37-45 medoid: GCA 905182755 1
    • AAI clade 37-46 medoid: GCA 015493215 1
    • AAI clade 37-47 medoid: GCA 000981645 1
    • AAI clade 37-48 medoid: asm GCA 000173095 1
      • AAI clade 37-48-1 medoid: GCA 902561795 1
      • AAI clade 37-48-2 medoid: GCA 902546725 1
      • AAI clade 37-48-3 medoid: GCA 002169865 1
      • AAI clade 37-48-4 medoid: GCA 017852075 1
      • AAI clade 37-48-5 medoid: GCA 002457295 1
        2 datasets: GCA 002457295 1 (AAI: 100.0%) and miga DE18A TARA MED MAG 00124 (AAI: 77.89%)
      • AAI clade 37-48-6 medoid: GCA 905182735 1
      • AAI clade 37-48-7 medoid: GCA 002714815 1
      • AAI clade 37-48-8 medoid: GCA 002719315 1
      • AAI clade 37-48-9 medoid: GCA 002721275 1
      • AAI clade 37-48-10 medoid: GCA 002723295 1
      • AAI clade 37-48-11 medoid: GCA 009886755 1
      • AAI clade 37-48-12 medoid: asm GCA 000173095 1
      • AAI clade 37-48-13 medoid: GCA 011524915 1
      • AAI clade 37-48-14 medoid: miga DE18A TARA MED MAG 00112
      • AAI clade 37-48-15 medoid: GCA 905182305 1
    • AAI clade 37-49 medoid: GCA 018623955 1
    • AAI clade 37-50 medoid: GCA 002707245 1
    • AAI clade 37-51 medoid: GCA 902628605 1
    • AAI clade 37-52 medoid: GCA 902586905 1
    • AAI clade 37-53 medoid: GCA 002862785 1
    • AAI clade 37-54 medoid: GCA 002863125 1
    • AAI clade 37-55 medoid: GCA 905480095 1
    • AAI clade 37-56 medoid: GCA 905479915 1
    • AAI clade 37-57 medoid: GCA 009886265 1
    • AAI clade 37-58 medoid: miga DE18A TARA MED MAG 00004
    • AAI clade 37-59 medoid: GCA 905181875 1
    • AAI clade 37-60 medoid: GCA 018401875 1
    • AAI clade 37-61 medoid: GCA 018623195 1
    • AAI clade 37-62 medoid: GCA 902594485 1
    • AAI clade 37-63 medoid: GCA 902554655 1
    • AAI clade 37-64 medoid: GCA 902626365 1
    • AAI clade 37-65 medoid: GCA 018608425 1
    • AAI clade 37-66 medoid: GCA 002683775 1
    • AAI clade 37-67 medoid: GCF 001735745 1
    • AAI clade 37-68 medoid: GCA 902510655 1
    • AAI clade 37-69 medoid: GCA 016779995 1
    • AAI clade 37-70 medoid: GCA 902609185 1
    • AAI clade 37-71 medoid: GCA 902546095 1
    • AAI clade 37-72 medoid: GCA 007128425 1
    • AAI clade 37-73 medoid: GCA 016780245 1
    • AAI clade 37-74 medoid: GCF 014251315 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1