AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 35-1
medoid: Bifidobacterium cebidarum GCA 009193305 1
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AAI clade 35-2
medoid: GCF 000718515 1
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AAI clade 35-3
medoid: GCF 001942045 1
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AAI clade 35-4
medoid: GCF 001667735 1
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AAI clade 35-5
medoid: GCA 018375675 1
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AAI clade 35-6
medoid: GCF 000010805 1
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AAI clade 35-7
medoid: GCA 905372155 1
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AAI clade 35-8
medoid: Arthrobacter celericrescens GCA 003614925 1
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AAI clade 35-9
medoid: Cellulosimicrobium cellulans GCA 006539945 1
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AAI clade 35-10
medoid: GCF 016907085 1
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AAI clade 35-11
medoid: GCF 001806325 1
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AAI clade 35-12
medoid: Actinomyces oris GCA 016127955 1
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AAI clade 35-13
medoid: Agromyces ramosus GCA 004216665 1
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AAI clade 35-14
medoid: Brevibacterium sediminis GCA 013623905 1
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AAI clade 35-15
medoid: GCF 000383675 1
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AAI clade 35-15-1
medoid: Kytococcus sedentarius GCA 900452405 1
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AAI clade 35-15-2
medoid: Austwickia chelonae GCA 900111385 1
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AAI clade 35-15-3
medoid: Luteipulveratus halotolerans GCA 001247745 1
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AAI clade 35-15-4
medoid: Branchiibius hedensis GCA 900108585 1
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AAI clade 35-15-5
medoid: Knoellia locipacati GCA 007992835 1
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AAI clade 35-15-6
medoid: Ornithinimicrobium pekingense DSM 21552 GCA 000421185 1
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AAI clade 35-15-7
medoid: GCF 016887965 1
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AAI clade 35-15-7-1
medoid: Phycicoccus jejuensis GCA 000720925 1
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AAI clade 35-15-7-1-1
medoid: Phycicoccus endophyticus GCA 014646175 1
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AAI clade 35-15-7-1-2
medoid: GCF 013201035 1
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AAI clade 35-15-7-1-3
medoid: Phycicoccus flavus GCA 004025965 2
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AAI clade 35-15-7-1-4
medoid: GCA 014763705 1
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AAI clade 35-15-7-1-5
medoid: GCF 011383005 1
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AAI clade 35-15-7-1-6
medoid: GCF 016887965 1
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AAI clade 35-15-7-1-7
medoid: GCF 016888005 1
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AAI clade 35-15-7-1-8
medoid: GCF 018139485 1
1 dataset: GCF 018139485 1 (AAI: 100.0%)
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AAI clade 35-15-7-1-1
medoid: Phycicoccus endophyticus GCA 014646175 1
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AAI clade 35-15-7-2
medoid: Phycicoccus duodecadis GCA 002846495 1
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AAI clade 35-15-7-3
medoid: Tetrasphaera japonica T1 X7 GCA 001046855 1
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AAI clade 35-15-7-4
medoid: Tetrasphaera jenkinsii Ben 74 GCA 001046875 1
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AAI clade 35-15-7-5
medoid: GCF 001426435 1
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AAI clade 35-15-7-6
medoid: miga PS19A ChngKR 2016 WBU005 bin 6
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AAI clade 35-15-7-1
medoid: Phycicoccus jejuensis GCA 000720925 1
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AAI clade 35-15-8
medoid: Serinicoccus chungangensis GCA 006337125 1
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AAI clade 35-15-9
medoid: Dermatophilus congolensis GCA 900187045 1
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AAI clade 35-15-10
medoid: Janibacter indicus GCA 900176385 1
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AAI clade 35-15-11
medoid: Allobranchiibius huperziae GCA 013410455 1
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AAI clade 35-15-12
medoid: Arsenicicoccus cauae GCA 009707125 1
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AAI clade 35-15-13
medoid: GCF 001429605 1
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AAI clade 35-15-14
medoid: GCF 001429185 1
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AAI clade 35-15-15
medoid: GCA 017989115 1
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AAI clade 35-15-16
medoid: Ornithinimicrobium cavernae GCA 003121625 1
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AAI clade 35-15-17
medoid: GCA 012927555 1
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AAI clade 35-15-18
medoid: GCA 016710385 1
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AAI clade 35-15-19
medoid: GCF 009184895 1
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AAI clade 35-15-1
medoid: Kytococcus sedentarius GCA 900452405 1
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AAI clade 35-16
medoid: GCF 004402535 1
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AAI clade 35-17
medoid: Cellulomonas terrae GCA 007990265 1
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AAI clade 35-18
medoid: GCF 004216905 1
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AAI clade 35-19
medoid: GCF 000633415 1
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AAI clade 35-20
medoid: GCF 900156435 1
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AAI clade 35-21
medoid: GCA 013813955 1
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AAI clade 35-1
medoid: Bifidobacterium cebidarum GCA 009193305 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1