AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
    • AAI clade 3-1 medoid: GCA 017449675 1
      • AAI clade 3-1-1 medoid: GCA 905214625 1
      • AAI clade 3-1-2 medoid: GCA 017449675 1
        • AAI clade 3-1-2-1 medoid: GCA 017449675 1
          • AAI clade 3-1-2-1-1 medoid: Hoylesella oralis GCA 900129435 1
          • AAI clade 3-1-2-1-2 medoid: Prevotella baroniae DSM 16972 JCM 13447 GCA 000426585 1
          • AAI clade 3-1-2-1-3 medoid: Prevotella brevis ATCC 19188 GCA 000621725 1
          • AAI clade 3-1-2-1-4 medoid: Hallella faecis GCA 018789675 1
          • AAI clade 3-1-2-1-5 medoid: Palleniella intestinalis GCA 013166595 1
          • AAI clade 3-1-2-1-6 medoid: Hallella colorans GCA 003096815 1
          • AAI clade 3-1-2-1-7 medoid: GCF 003932845 1
          • AAI clade 3-1-2-1-8 medoid: GCA 002305505 1
          • AAI clade 3-1-2-1-9 medoid: GCA 002315795 1
          • AAI clade 3-1-2-1-10 medoid: GCA 002317115 1
          • AAI clade 3-1-2-1-11 medoid: GCA 002350805 1
            3 datasets: GCA 002350805 1 (AAI: 100.0%), GCA 002353525 1 (AAI: 71.54%), and GCA 016291595 1 (AAI: 74.57%)
          • AAI clade 3-1-2-1-12 medoid: GCA 002353205 1
          • AAI clade 3-1-2-1-13 medoid: GCA 905235835 1
          • AAI clade 3-1-2-1-14 medoid: GCA 017449675 1
          • AAI clade 3-1-2-1-15 medoid: GCA 017442825 1
          • AAI clade 3-1-2-1-16 medoid: GCA 002362105 1
          • AAI clade 3-1-2-1-17 medoid: GCA 900315565 1
          • AAI clade 3-1-2-1-18 medoid: GCA 900315095 1
          • AAI clade 3-1-2-1-19 medoid: GCA 017471245 1
          • AAI clade 3-1-2-1-20 medoid: GCA 002451695 1
          • AAI clade 3-1-2-1-21 medoid: GCA 002439755 1
          • AAI clade 3-1-2-1-22 medoid: GCA 002449845 1
          • AAI clade 3-1-2-1-23 medoid: GCA 017424205 1
          • AAI clade 3-1-2-1-24 medoid: GCA 009787445 1
          • AAI clade 3-1-2-1-25 medoid: GCA 017545045 1
          • AAI clade 3-1-2-1-26 medoid: GCA 016287755 1
          • AAI clade 3-1-2-1-27 medoid: GCA 016287995 1
          • AAI clade 3-1-2-1-28 medoid: GCA 016302965 1
          • AAI clade 3-1-2-1-29 medoid: GCA 902768105 1
          • AAI clade 3-1-2-1-30 medoid: GCA 017428055 1
          • AAI clade 3-1-2-1-31 medoid: GCA 900314655 1
          • AAI clade 3-1-2-1-32 medoid: GCA 902800185 1
          • AAI clade 3-1-2-1-33 medoid: GCA 017445145 1
          • AAI clade 3-1-2-1-34 medoid: GCA 017445845 1
          • AAI clade 3-1-2-1-35 medoid: GCA 017449725 1
          • AAI clade 3-1-2-1-36 medoid: GCA 017468985 1
          • AAI clade 3-1-2-1-37 medoid: GCA 017477435 1
          • AAI clade 3-1-2-1-38 medoid: GCA 017479555 1
          • AAI clade 3-1-2-1-39 medoid: GCA 902776665 1
          • AAI clade 3-1-2-1-40 medoid: GCA 900316285 1
          • AAI clade 3-1-2-1-41 medoid: GCA 017557405 1
          • AAI clade 3-1-2-1-42 medoid: GCA 017616915 1
          • AAI clade 3-1-2-1-43 medoid: GCF 002933775 1
          • AAI clade 3-1-2-1-44 medoid: GCA 900315545 1
          • AAI clade 3-1-2-1-45 medoid: GCA 902801375 1
          • AAI clade 3-1-2-1-46 medoid: GCA 902779745 1
          • AAI clade 3-1-2-1-47 medoid: GCA 017940185 1
          • AAI clade 3-1-2-1-48 medoid: GCA 017940605 1
          • AAI clade 3-1-2-1-49 medoid: GCA 017959365 1
          • AAI clade 3-1-2-1-50 medoid: GCA 017960825 1
          • AAI clade 3-1-2-1-51 medoid: GCA 018065415 1
          • AAI clade 3-1-2-1-52 medoid: GCA 018385335 1
          • AAI clade 3-1-2-1-53 medoid: GCA 900314195 1
          • AAI clade 3-1-2-1-54 medoid: GCA 900316315 1
          • AAI clade 3-1-2-1-55 medoid: GCA 900318305 1
          • AAI clade 3-1-2-1-56 medoid: GCA 900319895 1
          • AAI clade 3-1-2-1-57 medoid: miga PS19A CM madagascar V12 01 2FE bin 27
          • AAI clade 3-1-2-1-58 medoid: GCA 900547085 1
          • AAI clade 3-1-2-1-59 medoid: GCA 900770395 1
          • AAI clade 3-1-2-1-60 medoid: GCA 902779265 1
          • AAI clade 3-1-2-1-61 medoid: GCA 902778265 1
          • AAI clade 3-1-2-1-62 medoid: GCA 902783885 1
          • AAI clade 3-1-2-1-63 medoid: GCA 902797505 1
          • AAI clade 3-1-2-1-64 medoid: GCA 905234815 1
          • AAI clade 3-1-2-1-65 medoid: GCA 905234845 1
          • AAI clade 3-1-2-1-66 medoid: GCA 905236195 1
          • AAI clade 3-1-2-1-67 medoid: GCA 905372445 1
          • AAI clade 3-1-2-1-68 medoid: GCF 002251245 1
          • AAI clade 3-1-2-1-69 medoid: GCF 900113305 1
          • AAI clade 3-1-2-1-70 medoid: miga DE18A TARA MED MAG 00135
        • AAI clade 3-1-2-2 medoid: GCA 902775475 1
      • AAI clade 3-1-3 medoid: GCA 900544495 1
      • AAI clade 3-1-4 medoid: GCA 017642485 1
      • AAI clade 3-1-5 medoid: GCA 016291085 1
      • AAI clade 3-1-6 medoid: GCA 017617615 1
    • AAI clade 3-2 medoid: Bacteroides luhongzhouii GCA 009193295 2
    • AAI clade 3-3 medoid: Bacteroides uniformis GCA 900107315 1
    • AAI clade 3-4 medoid: Phocaeicola fibrisolvens GCA 025567125 1
    • AAI clade 3-5 medoid: GCF 002224675 1
    • AAI clade 3-6 medoid: Parabacteroides merdae GCA 900445495 1
    • AAI clade 3-7 medoid: GCF 018127965 1
    • AAI clade 3-8 medoid: GCA 900550375 1
    • AAI clade 3-9 medoid: Butyricimonas paravirosa GCA 011927845 1
    • AAI clade 3-10 medoid: miga PS19A VogtmannE 2016 MMRS44197125ST 27 0 0 bin 35
    • AAI clade 3-11 medoid: Maribellus comscasis GCA 009762775 1
    • AAI clade 3-12 medoid: GCA 014801735 1
    • AAI clade 3-13 medoid: GCA 018054805 1
    • AAI clade 3-14 medoid: Prevotella ruminicola GCA 900108375 1
    • AAI clade 3-15 medoid: GCA 017405965 1
    • AAI clade 3-16 medoid: GCA 900543155 1
    • AAI clade 3-17 medoid: GCA 007132365 1
    • AAI clade 3-18 medoid: GCF 003712195 1
    • AAI clade 3-19 medoid: GCA 014801985 1
    • AAI clade 3-20 medoid: GCA 002372855 1
    • AAI clade 3-21 medoid: GCA 900317055 1
    • AAI clade 3-22 medoid: GCA 902776565 1
    • AAI clade 3-23 medoid: GCA 902774295 1
    • AAI clade 3-24 medoid: GCA 003157015 1
    • AAI clade 3-25 medoid: GCA 902801475 1
    • AAI clade 3-26 medoid: GCA 017961145 1
    • AAI clade 3-27 medoid: GCA 017394705 1
    • AAI clade 3-28 medoid: GCA 017557635 1
    • AAI clade 3-29 medoid: GCA 902786595 1
    • AAI clade 3-30 medoid: GCA 017555585 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1