AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
    • AAI clade 26-1 medoid: GCA 900760275 1
    • AAI clade 26-2 medoid: GCA 017453205 1
    • AAI clade 26-3 medoid: GCA 017482355 1
    • AAI clade 26-4 medoid: GCA 900544285 1
    • AAI clade 26-5 medoid: GCA 017482495 1
    • AAI clade 26-6 medoid: GCA 015064185 1
    • AAI clade 26-7 medoid: GCA 017429165 1
    • AAI clade 26-8 medoid: GCA 017482055 1
    • AAI clade 26-9 medoid: GCA 016280525 1
    • AAI clade 26-10 medoid: GCA 900757905 1
    • AAI clade 26-11 medoid: GCA 017415485 1
    • AAI clade 26-12 medoid: GCA 015064955 1
    • AAI clade 26-13 medoid: GCA 017453245 1
    • AAI clade 26-14 medoid: GCA 015063805 1
      6 datasets: GCA 002397345 1 (AAI: 52.04%), GCA 012519315 1 (AAI: 51.96%), GCA 015063805 1 (AAI: 100.0%), GCA 017407835 1 (AAI: 81.02%), GCA 017463865 1 (AAI: 72.09%), and GCA 017466495 1 (AAI: 88.95%)
    • AAI clade 26-15 medoid: GCA 017411885 1
    • AAI clade 26-16 medoid: GCA 017520825 1
    • AAI clade 26-17 medoid: GCA 900547725 1
    • AAI clade 26-18 medoid: GCA 900552255 1
    • AAI clade 26-19 medoid: GCA 017483125 1
    • AAI clade 26-20 medoid: GCA 003343845 1
    • AAI clade 26-21 medoid: GCA 017465885 1
    • AAI clade 26-22 medoid: GCA 900753295 1
    • AAI clade 26-23 medoid: GCA 905202255 1
    • AAI clade 26-24 medoid: GCA 017381715 1
    • AAI clade 26-25 medoid: GCA 015064745 1
    • AAI clade 26-26 medoid: GCA 009783265 1
    • AAI clade 26-27 medoid: GCA 017547655 1
    • AAI clade 26-28 medoid: GCA 012841635 1
    • AAI clade 26-29 medoid: GCA 017504995 1
    • AAI clade 26-30 medoid: GCA 902373415 1
    • AAI clade 26-31 medoid: GCA 015063385 1
    • AAI clade 26-32 medoid: GCA 015065295 1
    • AAI clade 26-33 medoid: GCA 017517035 1
    • AAI clade 26-34 medoid: GCA 017536475 1
    • AAI clade 26-35 medoid: GCA 017517325 1
    • AAI clade 26-36 medoid: GCA 017467815 1
    • AAI clade 26-37 medoid: GCA 015063785 1
    • AAI clade 26-38 medoid: GCA 017416185 1
    • AAI clade 26-39 medoid: GCA 017549925 1
    • AAI clade 26-40 medoid: GCA 017532425 1
    • AAI clade 26-41 medoid: GCA 015065385 1
    • AAI clade 26-42 medoid: GCA 015064805 1
    • AAI clade 26-43 medoid: GCA 017625065 1
    • AAI clade 26-44 medoid: GCA 017451485 1
    • AAI clade 26-45 medoid: GCA 015064505 1
    • AAI clade 26-46 medoid: GCA 017397955 1
    • AAI clade 26-47 medoid: GCA 017621475 1
    • AAI clade 26-48 medoid: GCA 017455975 1
    • AAI clade 26-49 medoid: GCA 904502055 1
    • AAI clade 26-50 medoid: GCA 017472695 1
    • AAI clade 26-51 medoid: GCA 017620655 1
    • AAI clade 26-52 medoid: GCA 017621755 1
    • AAI clade 26-53 medoid: GCA 017629395 1
    • AAI clade 26-54 medoid: GCA 902803255 1
    • AAI clade 26-55 medoid: GCA 017532025 1
    • AAI clade 26-56 medoid: GCA 017428635 1
    • AAI clade 26-57 medoid: GCA 017451585 1
    • AAI clade 26-58 medoid: GCA 017483195 1
    • AAI clade 26-59 medoid: GCA 902779285 1
    • AAI clade 26-60 medoid: miga PS19A XieH 2016 YSZC12003 36050 bin 45
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1