AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
    • AAI clade 23-1 medoid: GCF 014656495 1
    • AAI clade 23-2 medoid: GCF 017302985 1
    • AAI clade 23-3 medoid: miga ZQ19A BG 431
    • AAI clade 23-4 medoid: Geomonas anaerohicana GCA 016458305 1
    • AAI clade 23-5 medoid: Myxococcus qinghaiensis GCA 024198215 1
    • AAI clade 23-6 medoid: Nannocystis exedens GCA 900112715 1
    • AAI clade 23-7 medoid: GCF 002305875 1
    • AAI clade 23-8 medoid: GCA 007997005 1
    • AAI clade 23-9 medoid: GCA 004284765 1
    • AAI clade 23-10 medoid: GCF 000964525 1
    • AAI clade 23-11 medoid: GCA 003247215 1
    • AAI clade 23-12 medoid: GCA 016707895 1
    • AAI clade 23-13 medoid: GCF 002994635 1
    • AAI clade 23-14 medoid: asm GCA 900155255 1
      • AAI clade 23-14-1 medoid: Sandaracinus amylolyticus GCA 000737325 2
      • AAI clade 23-14-2 medoid: asm GCA 900155255 1
      • AAI clade 23-14-3 medoid: GCA 009781005 1
      • AAI clade 23-14-4 medoid: GCA 002321895 1
      • AAI clade 23-14-5 medoid: GCA 015231825 1
      • AAI clade 23-14-6 medoid: GCA 001797365 1
      • AAI clade 23-14-7 medoid: GCA 001798605 1
      • AAI clade 23-14-8 medoid: GCA 002731825 1
      • AAI clade 23-14-9 medoid: GCA 002433485 1
      • AAI clade 23-14-10 medoid: GCA 002722845 1
      • AAI clade 23-14-11 medoid: GCA 016702545 1
      • AAI clade 23-14-12 medoid: GCA 018780435 1
      • AAI clade 23-14-13 medoid: GCA 015478645 1
      • AAI clade 23-14-14 medoid: GCA 003170555 1
      • AAI clade 23-14-15 medoid: miga TJ18A OLLW01
      • AAI clade 23-14-16 medoid: GCA 016712525 1
      • AAI clade 23-14-17 medoid: GCA 009692485 1
      • AAI clade 23-14-18 medoid: GCA 007124745 1
      • AAI clade 23-14-19 medoid: GCA 007130885 1
      • AAI clade 23-14-20 medoid: GCA 007131745 1
      • AAI clade 23-14-21 medoid: GCA 009692505 1
      • AAI clade 23-14-22 medoid: GCA 016178705 1
      • AAI clade 23-14-23 medoid: GCA 016703535 1
      • AAI clade 23-14-24 medoid: GCA 015075635 1
      • AAI clade 23-14-25 medoid: GCA 903893315 1
      • AAI clade 23-14-26 medoid: GCA 900696485 1
      • AAI clade 23-14-27 medoid: GCA 016872815 1
      • AAI clade 23-14-28 medoid: GCA 016875215 1
      • AAI clade 23-14-29 medoid: GCA 017881185 1
      • AAI clade 23-14-30 medoid: GCA 018645005 1
      • AAI clade 23-14-31 medoid: GCA 018668695 1
      • AAI clade 23-14-32 medoid: GCF 000418325 1
    • AAI clade 23-15 medoid: GCA 015232455 1
    • AAI clade 23-16 medoid: Solidesulfovibrio carbinolicus GCA 004135975 1
    • AAI clade 23-17 medoid: GCA 009712225 1
    • AAI clade 23-18 medoid: Silvanigrella paludirubra GCA 009208775 1
    • AAI clade 23-19 medoid: GCA 004283055 1
    • AAI clade 23-20 medoid: GCA 016793325 1
    • AAI clade 23-21 medoid: GCA 001770015 1
    • AAI clade 23-22 medoid: GCA 018968995 1
    • AAI clade 23-23 medoid: GCA 001918155 1
    • AAI clade 23-24 medoid: GCA 003694325 1
    • AAI clade 23-25 medoid: GCA 009692515 1
    • AAI clade 23-26 medoid: GCA 012522935 1
    • AAI clade 23-27 medoid: GCA 002395385 1
    • AAI clade 23-28 medoid: GCA 905612265 1
    • AAI clade 23-29 medoid: GCA 016177705 1
    • AAI clade 23-30 medoid: GCA 903842345 1
    • AAI clade 23-31 medoid: GCA 018817795 1
    • AAI clade 23-32 medoid: GCA 002841945 1
    • AAI clade 23-33 medoid: GCA 003142855 1
    • AAI clade 23-34 medoid: GCA 016874735 1
    • AAI clade 23-35 medoid: GCA 016794365 1
    • AAI clade 23-36 medoid: GCA 016879935 1
    • AAI clade 23-37 medoid: GCA 010027105 1
    • AAI clade 23-38 medoid: GCA 004297725 1
    • AAI clade 23-39 medoid: GCA 016875315 1
    • AAI clade 23-40 medoid: GCA 903844155 1
    • AAI clade 23-41 medoid: GCA 016868315 1
    • AAI clade 23-42 medoid: GCA 016935665 1
    • AAI clade 23-43 medoid: GCA 016218815 1
    • AAI clade 23-44 medoid: GCA 903857665 1
    • AAI clade 23-45 medoid: GCA 903873545 1
    • AAI clade 23-46 medoid: GCA 016720595 1
    • AAI clade 23-47 medoid: GCA 900299055 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1