AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
    • AAI clade 19-1 medoid: Massilia puerhi GCA 009861485 1
    • AAI clade 19-2 medoid: GCF 000236785 1
    • AAI clade 19-3 medoid: Burkholderia cepacia GCA 900446175 1
    • AAI clade 19-4 medoid: GCF 013426895 1
    • AAI clade 19-5 medoid: GCF 009497775 1
    • AAI clade 19-6 medoid: GCF 900104795 1
    • AAI clade 19-7 medoid: GCF 900115545 1
    • AAI clade 19-8 medoid: Rubrivivax benzoatilyticus JA2 ATCC BAA 35 GCA 000420125 1
    • AAI clade 19-9 medoid: GCF 000739375 1
    • AAI clade 19-10 medoid: Pusillimonas harenae GCA 013416515 1
    • AAI clade 19-11 medoid: Herbaspirillum frisingense GSF30 GCA 000300975 2
    • AAI clade 19-12 medoid: GCF 001428625 1
    • AAI clade 19-13 medoid: Advenella incenata GCA 004217095 1
    • AAI clade 19-14 medoid: Pandoraea sputorum GCA 000814845 2
    • AAI clade 19-15 medoid: Paraburkholderia acidiphila GCA 009789655 1
    • AAI clade 19-16 medoid: GCF 000745325 1
    • AAI clade 19-17 medoid: Acidovorax delafieldii GCA 007993815 1
    • AAI clade 19-18 medoid: GCF 900111995 1
    • AAI clade 19-19 medoid: Pelomonas saccharophila GCA 004342485 1
    • AAI clade 19-20 medoid: GCA 018780565 1
      • AAI clade 19-20-1 medoid: Rhodoferax fermentans GCA 016583655 1
      • AAI clade 19-20-2 medoid: GCA 013791765 1
      • AAI clade 19-20-3 medoid: Curvibacter delicatus NBRC 14919 GCA 001592265 1
      • AAI clade 19-20-4 medoid: Rhodoferax sediminis GCA 006970865 1
      • AAI clade 19-20-5 medoid: GCA 001771065 1
      • AAI clade 19-20-6 medoid: GCF 003347515 1
        • AAI clade 19-20-6-1 medoid: GCF 003347515 1
          • AAI clade 19-20-6-1-1 medoid: GCF 003347515 1
          • AAI clade 19-20-6-1-2 medoid: GCA 002422455 1
            1 dataset: GCA 002422455 1 (AAI: 100.0%)
          • AAI clade 19-20-6-1-3 medoid: GCA 016708345 1
          • AAI clade 19-20-6-1-4 medoid: GCA 017880985 1
          • AAI clade 19-20-6-1-5 medoid: GCA 903823025 1
          • AAI clade 19-20-6-1-6 medoid: GCA 903840825 1
          • AAI clade 19-20-6-1-7 medoid: GCA 903938955 1
          • AAI clade 19-20-6-1-8 medoid: GCA 903960915 1
        • AAI clade 19-20-6-2 medoid: GCF 900104385 1
      • AAI clade 19-20-7 medoid: GCA 903897005 1
      • AAI clade 19-20-8 medoid: GCA 009693325 1
      • AAI clade 19-20-9 medoid: GCA 009922295 1
      • AAI clade 19-20-10 medoid: GCA 016718405 1
      • AAI clade 19-20-11 medoid: GCA 013298945 1
      • AAI clade 19-20-12 medoid: GCF 001432305 1
      • AAI clade 19-20-13 medoid: GCA 016703945 1
      • AAI clade 19-20-14 medoid: GCA 018063565 1
      • AAI clade 19-20-15 medoid: GCA 017997975 1
      • AAI clade 19-20-16 medoid: GCA 903822205 1
      • AAI clade 19-20-17 medoid: GCA 903914175 1
      • AAI clade 19-20-18 medoid: GCA 903838565 1
      • AAI clade 19-20-19 medoid: GCA 903920405 1
      • AAI clade 19-20-20 medoid: GCF 000477435 1
    • AAI clade 19-21 medoid: GCF 002163715 1
    • AAI clade 19-22 medoid: GCF 000768065 1
    • AAI clade 19-23 medoid: GCA 900754475 1
    • AAI clade 19-24 medoid: GCA 900552195 1
    • AAI clade 19-25 medoid: GCA 001544655 2
    • AAI clade 19-26 medoid: Cupriavidus alkaliphilus GCA 900094595 1
    • AAI clade 19-27 medoid: Duganella levis GCA 009857605 1
    • AAI clade 19-28 medoid: GCF 900100965 1
    • AAI clade 19-29 medoid: Caenimonas soli GCA 013155545 1
    • AAI clade 19-30 medoid: GCF 901538265 1
    • AAI clade 19-31 medoid: Limnohabitans parvus II B4 GCA 003063455 1
    • AAI clade 19-32 medoid: Pigmentiphaga kullae GCA 004216695 1
    • AAI clade 19-33 medoid: GCF 003711205 1
    • AAI clade 19-34 medoid: GCF 018882405 1
    • AAI clade 19-35 medoid: GCF 018882285 1
    • AAI clade 19-36 medoid: GCF 009937955 1
    • AAI clade 19-37 medoid: GCF 018882415 1
    • AAI clade 19-38 medoid: Caballeronia udeis GCA 001544555 2
    • AAI clade 19-39 medoid: GCF 013004065 1
    • AAI clade 19-40 medoid: GCF 002778315 1
    • AAI clade 19-41 medoid: GCA 900544345 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1