AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 19-1
medoid: Massilia puerhi GCA 009861485 1
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AAI clade 19-2
medoid: GCF 000236785 1
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AAI clade 19-3
medoid: Burkholderia cepacia GCA 900446175 1
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AAI clade 19-4
medoid: GCF 013426895 1
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AAI clade 19-5
medoid: GCF 009497775 1
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AAI clade 19-6
medoid: GCF 900104795 1
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AAI clade 19-7
medoid: GCF 900115545 1
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AAI clade 19-8
medoid: Rubrivivax benzoatilyticus JA2 ATCC BAA 35 GCA 000420125 1
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AAI clade 19-9
medoid: GCF 000739375 1
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AAI clade 19-10
medoid: Pusillimonas harenae GCA 013416515 1
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AAI clade 19-11
medoid: Herbaspirillum frisingense GSF30 GCA 000300975 2
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AAI clade 19-12
medoid: GCF 001428625 1
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AAI clade 19-13
medoid: Advenella incenata GCA 004217095 1
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AAI clade 19-14
medoid: Pandoraea sputorum GCA 000814845 2
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AAI clade 19-15
medoid: Paraburkholderia acidiphila GCA 009789655 1
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AAI clade 19-16
medoid: GCF 000745325 1
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AAI clade 19-17
medoid: Acidovorax delafieldii GCA 007993815 1
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AAI clade 19-17-1
medoid: Extensimonas vulgaris GCA 007830535 1
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AAI clade 19-17-2
medoid: Acidovorax caeni GCA 900116825 1
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AAI clade 19-17-3
medoid: Acidovorax oryzae ATCC 19882 GCA 000687165 1
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AAI clade 19-17-4
medoid: Curvibacter gracilis ATCC BAA 807 GCA 000518645 1
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AAI clade 19-17-5
medoid: GCA 002434305 1
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AAI clade 19-17-6
medoid: GCA 002285265 1
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AAI clade 19-17-7
medoid: Simplicispira metamorpha GCA 003568725 1
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AAI clade 19-17-8
medoid: Acidovorax delafieldii GCA 007993815 1
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AAI clade 19-17-9
medoid: GCF 002176815 1
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AAI clade 19-17-10
medoid: Acidovorax wautersii GCA 900113035 1
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AAI clade 19-17-11
medoid: GCA 012729605 1
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AAI clade 19-17-12
medoid: GCF 907163135 1
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AAI clade 19-17-13
medoid: Comamonas badia DSM 17552 GCA 000484635 1
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AAI clade 19-17-14
medoid: GCA 016192425 1
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AAI clade 19-17-15
medoid: Diaphorobacter caeni GCA 015354245 1
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AAI clade 19-17-16
medoid: GCF 001422365 1
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AAI clade 19-17-17
medoid: GCA 017988165 1
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AAI clade 19-17-18
medoid: GCF 902706035 1
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AAI clade 19-17-19
medoid: GCA 018241405 1
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AAI clade 19-17-20
medoid: Lampropedia hyalina DSM 16112 GCA 900129055 1
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AAI clade 19-17-21
medoid: Ottowia testudinis GCA 017498525 1
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AAI clade 19-17-22
medoid: Ottowia massiliensis GCA 900240305 1
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AAI clade 19-17-23
medoid: GCF 001633105 1
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AAI clade 19-17-24
medoid: GCF 003669015 1
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AAI clade 19-17-25
medoid: Lampropedia puyangensis GCA 004833285 1
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AAI clade 19-17-26
medoid: GCF 008017535 1
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AAI clade 19-17-27
medoid: GCA 017985015 1
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AAI clade 19-17-28
medoid: GCA 001770955 1
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AAI clade 19-17-29
medoid: GCA 013693755 1
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AAI clade 19-17-30
medoid: GCF 016428875 1
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AAI clade 19-17-31
medoid: GCF 001424425 1
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AAI clade 19-17-32
medoid: GCA 016721925 1
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AAI clade 19-17-33
medoid: GCA 009778355 1
1 dataset: GCA 009778355 1 (AAI: 100.0%)
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AAI clade 19-17-34
medoid: GCA 016790575 1
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AAI clade 19-17-35
medoid: GCA 017307865 1
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AAI clade 19-17-36
medoid: GCA 017437605 1
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AAI clade 19-17-37
medoid: GCA 017993135 1
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AAI clade 19-17-38
medoid: GCA 017996515 1
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AAI clade 19-17-39
medoid: GCA 018054915 1
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AAI clade 19-17-40
medoid: GCA 903828535 1
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AAI clade 19-17-41
medoid: GCF 019195435 1
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AAI clade 19-17-42
medoid: GCF 018413605 1
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AAI clade 19-17-1
medoid: Extensimonas vulgaris GCA 007830535 1
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AAI clade 19-18
medoid: GCF 900111995 1
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AAI clade 19-19
medoid: Pelomonas saccharophila GCA 004342485 1
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AAI clade 19-20
medoid: GCA 018780565 1
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AAI clade 19-21
medoid: GCF 002163715 1
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AAI clade 19-22
medoid: GCF 000768065 1
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AAI clade 19-23
medoid: GCA 900754475 1
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AAI clade 19-24
medoid: GCA 900552195 1
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AAI clade 19-25
medoid: GCA 001544655 2
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AAI clade 19-26
medoid: Cupriavidus alkaliphilus GCA 900094595 1
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AAI clade 19-27
medoid: Duganella levis GCA 009857605 1
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AAI clade 19-28
medoid: GCF 900100965 1
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AAI clade 19-29
medoid: Caenimonas soli GCA 013155545 1
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AAI clade 19-30
medoid: GCF 901538265 1
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AAI clade 19-31
medoid: Limnohabitans parvus II B4 GCA 003063455 1
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AAI clade 19-32
medoid: Pigmentiphaga kullae GCA 004216695 1
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AAI clade 19-33
medoid: GCF 003711205 1
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AAI clade 19-34
medoid: GCF 018882405 1
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AAI clade 19-35
medoid: GCF 018882285 1
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AAI clade 19-36
medoid: GCF 009937955 1
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AAI clade 19-37
medoid: GCF 018882415 1
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AAI clade 19-38
medoid: Caballeronia udeis GCA 001544555 2
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AAI clade 19-39
medoid: GCF 013004065 1
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AAI clade 19-40
medoid: GCF 002778315 1
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AAI clade 19-41
medoid: GCA 900544345 1
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AAI clade 19-1
medoid: Massilia puerhi GCA 009861485 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1