AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
    • AAI clade 15-1 medoid: Desulfofundulus thermosubterraneus DSM 16057 GCA 900142025 1
    • AAI clade 15-2 medoid: GCA 002747175 1
      • AAI clade 15-2-1 medoid: GCA 002747175 1
      • AAI clade 15-2-2 medoid: GCA 011042035 1
        • AAI clade 15-2-2-1 medoid: Dethiosulfatarculus sandiegensis GCA 000931935 2
        • AAI clade 15-2-2-2 medoid: Desulfarculus baarsii DSM 2075 GCA 000143965 1
        • AAI clade 15-2-2-3 medoid: Desulfatiglans anilini DSM 4660 GCA 000422285 1
        • AAI clade 15-2-2-4 medoid: GCA 016212935 1
        • AAI clade 15-2-2-5 medoid: GCA 000179315 1
        • AAI clade 15-2-2-6 medoid: GCA 001797675 1
        • AAI clade 15-2-2-7 medoid: GCA 001874005 1
        • AAI clade 15-2-2-8 medoid: GCA 002050025 1
        • AAI clade 15-2-2-9 medoid: GCA 002424495 1
        • AAI clade 15-2-2-10 medoid: GCA 002840535 1
        • AAI clade 15-2-2-11 medoid: GCA 002899795 1
        • AAI clade 15-2-2-12 medoid: GCA 003154025 1
        • AAI clade 15-2-2-13 medoid: asm GCA 001797785 1
        • AAI clade 15-2-2-14 medoid: GCA 018902755 1
        • AAI clade 15-2-2-15 medoid: GCA 003646815 1
        • AAI clade 15-2-2-16 medoid: GCA 011042035 1
        • AAI clade 15-2-2-17 medoid: asm GCA 003646925 1
        • AAI clade 15-2-2-18 medoid: GCA 003646975 1
        • AAI clade 15-2-2-19 medoid: GCA 003819975 1
        • AAI clade 15-2-2-20 medoid: GCA 011046395 1
        • AAI clade 15-2-2-21 medoid: GCA 014382715 1
        • AAI clade 15-2-2-22 medoid: GCA 016931115 1
        • AAI clade 15-2-2-23 medoid: GCA 013139225 1
          1 dataset: GCA 013139225 1 (AAI: 100.0%)
        • AAI clade 15-2-2-24 medoid: GCA 016783065 1
        • AAI clade 15-2-2-25 medoid: GCA 013349725 1
        • AAI clade 15-2-2-26 medoid: GCA 015233055 1
        • AAI clade 15-2-2-27 medoid: GCA 016218705 1
        • AAI clade 15-2-2-28 medoid: GCA 016208165 1
        • AAI clade 15-2-2-29 medoid: GCA 016219065 1
        • AAI clade 15-2-2-30 medoid: GCA 016234425 1
        • AAI clade 15-2-2-31 medoid: GCA 016874895 1
        • AAI clade 15-2-2-32 medoid: GCA 016927455 1
        • AAI clade 15-2-2-33 medoid: GCA 016929755 1
        • AAI clade 15-2-2-34 medoid: GCA 016930795 1
        • AAI clade 15-2-2-35 medoid: GCA 016930835 1
        • AAI clade 15-2-2-36 medoid: GCA 016932115 1
        • AAI clade 15-2-2-37 medoid: GCA 016932235 1
        • AAI clade 15-2-2-38 medoid: GCA 018400255 1
        • AAI clade 15-2-2-39 medoid: GCA 018812395 1
        • AAI clade 15-2-2-40 medoid: GCA 018830135 1
        • AAI clade 15-2-2-41 medoid: GCA 903952205 1
        • AAI clade 15-2-2-42 medoid: GCF 001184205 1
        • AAI clade 15-2-2-43 medoid: asm GCA 001798945 1
        • AAI clade 15-2-2-44 medoid: asm GCA 003567915 1
        • AAI clade 15-2-2-45 medoid: asm GCA 003646955 1
        • AAI clade 15-2-2-46 medoid: asm GCA 003647505 1
        • AAI clade 15-2-2-47 medoid: asm GCA 003647535 1
        • AAI clade 15-2-2-48 medoid: miga WB18A mgm4762922 3 050 upload
        • AAI clade 15-2-2-49 medoid: miga WB18A mgm4762943 3 050 upload
        • AAI clade 15-2-2-50 medoid: miga WB18A mgm4762962 3 050 upload
      • AAI clade 15-2-3 medoid: GCA 002298995 1
    • AAI clade 15-3 medoid: Thermus brevis GCA 019430925 1
    • AAI clade 15-4 medoid: GCA 011390335 1
    • AAI clade 15-5 medoid: GCA 007132965 1
    • AAI clade 15-6 medoid: asm GCA 003646665 1
    • AAI clade 15-7 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
    • AAI clade 15-8 medoid: Geomobilimonas luticola GCA 018476905 1
    • AAI clade 15-9 medoid: miga PS19A RampelliS 2015 H18 bin 7
    • AAI clade 15-10 medoid: Polycladomyces abyssicola GCA 018326425 1
    • AAI clade 15-11 medoid: Sporomusa silvacetica DSM 10669 GCA 002257705 1
    • AAI clade 15-12 medoid: Desulfosporosinus meridiei DSM 13257 GCA 000231385 3
    • AAI clade 15-13 medoid: GCA 015484845 1
    • AAI clade 15-14 medoid: Selenomonas timonae GCA 014250475 1
    • AAI clade 15-15 medoid: GCA 003251995 1
    • AAI clade 15-16 medoid: GCA 015222205 1
    • AAI clade 15-17 medoid: GCA 015484715 1
    • AAI clade 15-18 medoid: GCA 003599285 1
    • AAI clade 15-19 medoid: asm GCA 001825595 1
    • AAI clade 15-20 medoid: GCA 003070825 1
    • AAI clade 15-21 medoid: GCA 003554615 1
    • AAI clade 15-22 medoid: GCA 905234075 1
    • AAI clade 15-23 medoid: asm GCA 001830135 1
    • AAI clade 15-24 medoid: GCA 003222055 1
    • AAI clade 15-25 medoid: GCF 002532075 1
    • AAI clade 15-26 medoid: GCA 000753945 1
    • AAI clade 15-27 medoid: asm GCF 000365325 1
    • AAI clade 15-28 medoid: GCA 016841875 1
    • AAI clade 15-29 medoid: GCA 012719415 1
    • AAI clade 15-30 medoid: GCA 012837925 1
    • AAI clade 15-31 medoid: GCA 002869845 2
    • AAI clade 15-32 medoid: GCF 900170025 1
    • AAI clade 15-33 medoid: asm GCA 004376215 1
    • AAI clade 15-34 medoid: GCA 012271015 1
    • AAI clade 15-35 medoid: GCA 016217925 1
    • AAI clade 15-36 medoid: GCA 003141955 1
    • AAI clade 15-37 medoid: GCA 003220495 1
    • AAI clade 15-38 medoid: GCA 011391555 1
    • AAI clade 15-39 medoid: GCA 001797465 1
    • AAI clade 15-40 medoid: GCA 001805765 1
    • AAI clade 15-41 medoid: GCA 003132665 1
    • AAI clade 15-42 medoid: GCA 005889085 1
    • AAI clade 15-43 medoid: GCA 018673955 1
    • AAI clade 15-44 medoid: GCA 009392095 1
    • AAI clade 15-45 medoid: GCA 003151115 1
    • AAI clade 15-46 medoid: GCA 005889345 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1