AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 15-1
medoid: Desulfofundulus thermosubterraneus DSM 16057 GCA 900142025 1
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AAI clade 15-2
medoid: GCA 002747175 1
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AAI clade 15-3
medoid: Thermus brevis GCA 019430925 1
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AAI clade 15-4
medoid: GCA 011390335 1
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AAI clade 15-5
medoid: GCA 007132965 1
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AAI clade 15-6
medoid: asm GCA 003646665 1
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AAI clade 15-7
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 15-8
medoid: Geomobilimonas luticola GCA 018476905 1
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AAI clade 15-9
medoid: miga PS19A RampelliS 2015 H18 bin 7
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AAI clade 15-10
medoid: Polycladomyces abyssicola GCA 018326425 1
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AAI clade 15-10-1
medoid: Alicyclobacillus acidoterrestris ATCC 49025 GCA 000444055 1
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AAI clade 15-10-2
medoid: Alicyclobacillus macrosporangiidus GCA 900116805 1
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AAI clade 15-10-3
medoid: Calditerricola satsumensis GCA 014646935 1
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AAI clade 15-10-4
medoid: Cohnella nanjingensis GCA 014212125 1
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AAI clade 15-10-5
medoid: Kroppenstedtia eburnea GCA 013282215 1
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AAI clade 15-10-5-1
medoid: Kroppenstedtia eburnea GCA 013282215 1
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AAI clade 15-10-5-2
medoid: Kroppenstedtia pulmonis GCA 013265585 1
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AAI clade 15-10-5-3
medoid: Marininema halotolerans GCA 900116235 1
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AAI clade 15-10-5-4
medoid: Melghirimyces profundicolus GCA 003054245 1
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AAI clade 15-10-5-5
medoid: Desmospora activa DSM 45169 GCA 003046315 1
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AAI clade 15-10-5-6
medoid: Paludifilum halophilum GCA 002245355 1
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AAI clade 15-10-5-1
medoid: Kroppenstedtia eburnea GCA 013282215 1
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AAI clade 15-10-6
medoid: Thermoactinomyces daqus GCA 000763315 1
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AAI clade 15-10-7
medoid: Thermobacillus xylanilyticus GCA 907165215 1
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AAI clade 15-10-8
medoid: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 GCA 000024285 1
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AAI clade 15-10-9
medoid: Effusibacillus lacus GCA 002335525 1
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AAI clade 15-10-10
medoid: Ferroacidibacillus organovorans GCA 001602485 1
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AAI clade 15-10-11
medoid: GCA 014896255 1
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AAI clade 15-10-12
medoid: Alicyclobacillus kakegawensis NBRC 103104 GCA 001552655 1
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AAI clade 15-10-13
medoid: Alicyclobacillus sacchari GCA 004366795 1
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AAI clade 15-10-14
medoid: Anaerobranca gottschalkii DSM 13577 GCA 900111575 1
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AAI clade 15-10-15
medoid: GCA 017656235 1
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AAI clade 15-10-16
medoid: Planifilum fimeticola GCA 003001905 1
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AAI clade 15-10-17
medoid: Tumebacillus amylolyticus GCA 016722965 1
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AAI clade 15-10-18
medoid: Kyrpidia tusciae DSM 2912 GCA 000092905 1
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AAI clade 15-10-19
medoid: Alicyclobacillus mengziensis GCA 017298635 1
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AAI clade 15-10-20
medoid: Brockia lithotrophica GCA 003633725 1
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AAI clade 15-10-21
medoid: Tumebacillus avium GCA 002162355 1
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AAI clade 15-10-22
medoid: GCA 001787475 1
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AAI clade 15-10-23
medoid: GCA 015661035 1
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AAI clade 15-10-24
medoid: GCF 900107305 1
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AAI clade 15-10-1
medoid: Alicyclobacillus acidoterrestris ATCC 49025 GCA 000444055 1
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AAI clade 15-11
medoid: Sporomusa silvacetica DSM 10669 GCA 002257705 1
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AAI clade 15-12
medoid: Desulfosporosinus meridiei DSM 13257 GCA 000231385 3
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AAI clade 15-13
medoid: GCA 015484845 1
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AAI clade 15-14
medoid: Selenomonas timonae GCA 014250475 1
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AAI clade 15-15
medoid: GCA 003251995 1
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AAI clade 15-16
medoid: GCA 015222205 1
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AAI clade 15-17
medoid: GCA 015484715 1
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AAI clade 15-18
medoid: GCA 003599285 1
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AAI clade 15-19
medoid: asm GCA 001825595 1
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AAI clade 15-20
medoid: GCA 003070825 1
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AAI clade 15-21
medoid: GCA 003554615 1
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AAI clade 15-22
medoid: GCA 905234075 1
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AAI clade 15-23
medoid: asm GCA 001830135 1
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AAI clade 15-24
medoid: GCA 003222055 1
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AAI clade 15-25
medoid: GCF 002532075 1
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AAI clade 15-26
medoid: GCA 000753945 1
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AAI clade 15-27
medoid: asm GCF 000365325 1
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AAI clade 15-28
medoid: GCA 016841875 1
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AAI clade 15-29
medoid: GCA 012719415 1
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AAI clade 15-30
medoid: GCA 012837925 1
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AAI clade 15-31
medoid: GCA 002869845 2
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AAI clade 15-32
medoid: GCF 900170025 1
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AAI clade 15-33
medoid: asm GCA 004376215 1
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AAI clade 15-34
medoid: GCA 012271015 1
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AAI clade 15-35
medoid: GCA 016217925 1
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AAI clade 15-36
medoid: GCA 003141955 1
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AAI clade 15-37
medoid: GCA 003220495 1
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AAI clade 15-38
medoid: GCA 011391555 1
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AAI clade 15-39
medoid: GCA 001797465 1
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AAI clade 15-40
medoid: GCA 001805765 1
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AAI clade 15-41
medoid: GCA 003132665 1
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AAI clade 15-42
medoid: GCA 005889085 1
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AAI clade 15-43
medoid: GCA 018673955 1
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AAI clade 15-44
medoid: GCA 009392095 1
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AAI clade 15-45
medoid: GCA 003151115 1
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AAI clade 15-46
medoid: GCA 005889345 1
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AAI clade 15-1
medoid: Desulfofundulus thermosubterraneus DSM 16057 GCA 900142025 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1