AAI clade 11-5-10-10 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
AAI clade 2 medoid: GCA 017448355 1
AAI clade 3 medoid: GCA 017467885 1
AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
AAI clade 7 medoid: miga SS18A Bin 41 contigs
AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
AAI clade 9 medoid: GCA 900755995 1
AAI clade 10 medoid: GCF 013113835 1
AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
- AAI clade 11-1 medoid: Listeria innocua GCA 024721565 1
- AAI clade 11-2 medoid: Levilactobacillus suantsaiihabitans GCA 004745505 1
- AAI clade 11-3 medoid: GCA 905221215 1
- AAI clade 11-4 medoid: Lactobacillus kitasatonis DSM 16761 JCM 1039 GCA 001434435 1
- AAI clade 11-5 medoid: GCF 017303275 1
  - AAI clade 11-5-1 medoid: Bacillus inaquosorum GCA 003148415 1
  - AAI clade 11-5-2 medoid: GCF 002265635 1
  - AAI clade 11-5-3 medoid: Geobacillus kaustophilus NBRC 102445 GCA 005160065 1
  - AAI clade 11-5-4 medoid: GCF 002797375 1
  - AAI clade 11-5-5 medoid: Bacillus safensis FO 36b GCA 003097715 1
  - AAI clade 11-5-6 medoid: GCF 001655645 1
  - AAI clade 11-5-7 medoid: Heyndrickxia sporothermodurans GCA 016785185 1
  - AAI clade 11-5-8 medoid: Anoxybacillus gonensis GCA 001187595 1
  - AAI clade 11-5-9 medoid: Domibacillus iocasae GCA 001750285 1
  - AAI clade 11-5-10 medoid: GCF 000294775 2
    
    AAI clade 11-5-10-1 medoid: Bacillus aquiflavi GCA 011008855 1
    
    AAI clade 11-5-10-2 medoid: GCF 000565285 1
    
    AAI clade 11-5-10-3 medoid: Cytobacillus gottheilii GCA 001636345 1
    
    AAI clade 11-5-10-4 medoid: Cytobacillus solani GCA 001420595 1
    
    AAI clade 11-5-10-5 medoid: GCF 900104575 1
    
    AAI clade 11-5-10-6 medoid: Peribacillus kribbensis DSM 17871 GCA 000430765 1
    
    AAI clade 11-5-10-7 medoid: GCF 002276165 1
    
    AAI clade 11-5-10-8 medoid: Pseudoneobacillus rhizosphaerae GCA 917563885 1
    
    AAI clade 11-5-10-9 medoid: GCF 018343665 1
    
    AAI clade 11-5-10-10 medoid: Caldibacillus hisashii GCA 027568575 1
    
    1 dataset: Caldibacillus hisashii GCA 027568575 1 (AAI: 100.0%)
    
    AAI clade 11-5-10-11 medoid: GCF 003182355 1
    
    AAI clade 11-5-10-12 medoid: GCF 000242895 2
    
    AAI clade 11-5-10-13 medoid: GCF 002860125 1
  - AAI clade 11-5-11 medoid: GCF 002734285 1
  - AAI clade 11-5-12 medoid: Mesobacillus jeotgali GCA 002874535 1
  - AAI clade 11-5-13 medoid: GCF 007678255 1
  - AAI clade 11-5-14 medoid: Turicibacter bilis GCA 018305205 1
  - AAI clade 11-5-15 medoid: Metabacillus halosaccharovorans GCA 002019635 1
  - AAI clade 11-5-16 medoid: GCF 018343715 1
  - AAI clade 11-5-17 medoid: GCF 002561455 1
  - AAI clade 11-5-18 medoid: GCF 008764295 1
  - AAI clade 11-5-19 medoid: GCF 018613325 1
  - AAI clade 11-5-20 medoid: GCF 012524115 1
  - AAI clade 11-5-21 medoid: Schinkia azotoformans LMG 9581 GCA 000307855 1
  - AAI clade 11-5-22 medoid: Jeotgalibacillus alimentarius GCA 000829445 1
  - AAI clade 11-5-23 medoid: Bacillus norwichensis GCA 014836955 1
  - AAI clade 11-5-24 medoid: Niallia circulans NBRC 13626 GCA 001591585 1
  - AAI clade 11-5-25 medoid: GCF 000732485 2
  - AAI clade 11-5-26 medoid: GCF 000613125 1
  - AAI clade 11-5-27 medoid: Pradoshia eiseniae GCA 002946355 1
- AAI clade 11-6 medoid: Lysinibacillus agricola GCA 016638705 1
- AAI clade 11-7 medoid: Leuconostoc lactis KCTC 3773 GCA 000179875 1
- AAI clade 11-8 medoid: Staphylococcus petrasii GCA 900458665 1
- AAI clade 11-9 medoid: Enterococcus rotai GCA 001465345 1
- AAI clade 11-10 medoid: Bacillus paramycoides GCA 001884235 1
- AAI clade 11-11 medoid: Limosilactobacillus balticus GCA 014145615 1
- AAI clade 11-12 medoid: Companilactobacillus zhachilii GCA 003606365 2
- AAI clade 11-13 medoid: Virgibacillus ndiopensis GCA 900187325 1
- AAI clade 11-14 medoid: Paenibacillus taichungensis GCA 013359905 1
- AAI clade 11-15 medoid: Anaerobacillus arseniciselenatis GCA 001865995 1
- AAI clade 11-16 medoid: Brevibacillus formosus GCA 003013405 1
- AAI clade 11-17 medoid: miga PS19A HMP 2012 SRS052668 bin 1
- AAI clade 11-18 medoid: GCF 003436425 1
- AAI clade 11-19 medoid: GCF 005960665 1
- AAI clade 11-20 medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCA 000422905 1
- AAI clade 11-21 medoid: GCF 001682865 1
AAI clade 12 medoid: GCA 016840965 1
AAI clade 13 medoid: GCA 017622235 1
AAI clade 14 medoid: GCA 904390925 1
AAI clade 15 medoid: GCA 002375985 1
AAI clade 16 medoid: GCA 003963015 1
AAI clade 17 medoid: GCA 001771585 1
AAI clade 18 medoid: GCF 018398895 1
AAI clade 19 medoid: GCA 001295775 1
AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
AAI clade 21 medoid: GCF 009363535 1
AAI clade 22 medoid: GCA 904374795 1
AAI clade 23 medoid: GCA 903955385 1
AAI clade 24 medoid: GCA 903887975 1
AAI clade 25 medoid: GCA 902602655 1
AAI clade 26 medoid: GCA 905235755 1
AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
AAI clade 28 medoid: GCA 903909555 1
AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
AAI clade 30 medoid: GCA 015061955 1
AAI clade 31 medoid: GCA 000421065 1
AAI clade 32 medoid: GCA 002438845 1
AAI clade 33 medoid: GCA 003602665 1
AAI clade 34 medoid: GCA 910585295 1
AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
AAI clade 36 medoid: GCA 017608235 1
AAI clade 37 medoid: GCF 004332155 1
AAI clade 38 medoid: GCA 009712635 1
AAI clade 39 medoid: GCA 903926605 1
AAI clade 40 medoid: GCA 017645955 1
AAI clade 41 medoid: GCA 016793015 1
AAI clade 42 medoid: GCA 900538305 1
AAI clade 43 medoid: GCA 001002765 1
AAI clade 44 medoid: GCA 902559935 1
AAI clade 45 medoid: GCA 011371455 1
AAI clade 46 medoid: GCA 000435515 1
AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
AAI clade 48 medoid: GCF 002835935 1
AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
AAI clade 50 medoid: GCA 002338255 1
AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
AAI clade 52 medoid: GCA 900167925 1
AAI clade 53 medoid: GCA 900550065 1
AAI clade 54 medoid: GCA 002314915 1
AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
AAI clade 56 medoid: GCA 005882335 1
AAI clade 57 medoid: GCA 011065225 1
AAI clade 58 medoid: GCA 016781775 1
AAI clade 59 medoid: GCA 002362595 1
AAI clade 60 medoid: GCA 016214555 1
AAI clade 61 medoid: GCF 014764505 1
AAI clade 62 medoid: GCA 902623215 1
AAI clade 63 medoid: GCA 003514205 1
AAI clade 64 medoid: GCF 009707955 1
AAI clade 65 medoid: GCF 000348745 1
AAI clade 66 medoid: GCA 900772425 1
AAI clade 67 medoid: GCF 003590645 1
AAI clade 68 medoid: GCF 902506105 1
AAI clade 69 medoid: GCF 013407275 1
AAI clade 70 medoid: GCA 015494795 1
AAI clade 71 medoid: GCA 016709995 1
AAI clade 72 medoid: GCA 002493965 1
AAI clade 73 medoid: GCA 009469665 1
AAI clade 74 medoid: GCA 001799635 1
AAI clade 75 medoid: GCA 016650235 1
AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
AAI clade 77 medoid: GCA 009903855 1
AAI clade 78 medoid: GCA 019204045 1
AAI clade 79 medoid: GCA 902783375 1
AAI clade 80 medoid: GCF 000350105 1
AAI clade 81 medoid: GCA 903901345 1
AAI clade 82 medoid: GCA 015075425 1
AAI clade 83 medoid: GCA 001508835 1
AAI clade 84 medoid: GCA 017746715 1
AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
AAI clade 86 medoid: GCA 017438285 1
AAI clade 87 medoid: GCA 002712945 1
AAI clade 88 medoid: GCF 002214625 1
AAI clade 89 medoid: GCA 902773215 1
AAI clade 90 medoid: GCA 002723385 1
AAI clade 91 medoid: GCA 019113455 1
AAI clade 92 medoid: GCA 016286935 1
AAI clade 93 medoid: GCA 003566775 1

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