AAI clade 10-3-1-10 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
AAI clade 2 medoid: GCA 017448355 1
AAI clade 3 medoid: GCA 017467885 1
AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
AAI clade 7 medoid: miga SS18A Bin 41 contigs
AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
AAI clade 9 medoid: GCA 900755995 1
AAI clade 10 medoid: GCF 013113835 1
- AAI clade 10-1 medoid: Pectobacterium polonicum GCA 005497185 1
- AAI clade 10-2 medoid: Serratia liquefaciens ATCC 27592 GCA 000422085 1
- AAI clade 10-3 medoid: Enterobacter oligotrophicus GCA 009176645 1
  - AAI clade 10-3-1 medoid: Citrobacter farmeri GCA 019048065 1
    
    AAI clade 10-3-1-1 medoid: Salmonella enterica GCA 003201315 1
    
    AAI clade 10-3-1-2 medoid: Citrobacter rodentium NBRC 105723 DSM 16636 GCA 000759815 1
    
    AAI clade 10-3-1-3 medoid: Citrobacter amalonaticus GCA 018323885 1
    
    AAI clade 10-3-1-4 medoid: Salmonella enterica subsp. arizonae GCA 008692845 1
    
    AAI clade 10-3-1-5 medoid: Citrobacter farmeri GCA 019048065 1
    
    AAI clade 10-3-1-6 medoid: Citrobacter sedlakii NBRC 105722 GCA 000759835 1
    
    AAI clade 10-3-1-7 medoid: Salmonella bongori NCTC 12419 GCA 000252995 1
    
    AAI clade 10-3-1-8 medoid: Intestinirhabdus alba GCA 009711095 1
    
    AAI clade 10-3-1-9 medoid: GCA 900446925 1
    
    AAI clade 10-3-1-10 medoid: GCF 002918555 1
    
    1 dataset: GCF 002918555 1 (AAI: 100.0%)
    
    AAI clade 10-3-1-11 medoid: GCF 013836145 1
  - AAI clade 10-3-2 medoid: Klebsiella pneumoniae subsp. pneumoniae GCA 000788015 1
  - AAI clade 10-3-3 medoid: Shigella boydii GCA 003572535 1
  - AAI clade 10-3-4 medoid: GCF 001022965 1
  - AAI clade 10-3-5 medoid: Cronobacter sakazakii NBRC 102416 GCA 000684935 1
  - AAI clade 10-3-6 medoid: Citrobacter freundii ATCC 8090 MTCC 1658 NBRC 12681 GCA 000759735 1
  - AAI clade 10-3-7 medoid: Klebsiella michiganensis GCA 002925905 1
  - AAI clade 10-3-8 medoid: GCA 002360945 1
  - AAI clade 10-3-9 medoid: Lelliottia nimipressuralis GCA 004115925 1
  - AAI clade 10-3-10 medoid: Raoultella planticola GCA 004345285 1
  - AAI clade 10-3-11 medoid: Shimwellia blattae GCA 900636035 1
  - AAI clade 10-3-12 medoid: Trabulsiella guamensis ATCC 49490 GCA 000734965 1
  - AAI clade 10-3-13 medoid: Atlantibacter subterranea GCA 027853245 1
  - AAI clade 10-3-14 medoid: Buttiauxella gaviniae ATCC 51604 GCA 001654835 1
  - AAI clade 10-3-15 medoid: GCF 000277545 1
  - AAI clade 10-3-16 medoid: Kluyvera sichuanensis GCA 014218705 1
  - AAI clade 10-3-17 medoid: Kosakonia sacchari GCA 900100995 1
  - AAI clade 10-3-18 medoid: GCF 002918705 1
  - AAI clade 10-3-19 medoid: GCA 000302695 1
  - AAI clade 10-3-20 medoid: Scandinavium goeteborgense GCA 003935895 2
  - AAI clade 10-3-21 medoid: Pseudocitrobacter vendiensis GCA 943590815 1
  - AAI clade 10-3-22 medoid: GCA 900112785 1
  - AAI clade 10-3-23 medoid: Dryocola boscaweniae GCA 025215095 1
  - AAI clade 10-3-24 medoid: Mangrovibacter phragmitis GCA 001655675 1
  - AAI clade 10-3-25 medoid: Superficieibacter electus GCA 002915575 1
  - AAI clade 10-3-26 medoid: GCF 018323985 1
- AAI clade 10-4 medoid: Vibrio rotiferianus CAIM 577 LMG 21460 GCA 002741985 1
- AAI clade 10-5 medoid: GCF 000217915 1
- AAI clade 10-6 medoid: Aeromonas veronii bv veronii GCA 018359905 1
- AAI clade 10-7 medoid: Pseudoalteromonas espejiana DSM 9414 GCA 002221525 1
- AAI clade 10-8 medoid: GCF 000210895 1
- AAI clade 10-9 medoid: Xenorhabdus griffiniae GCA 028598495 1
- AAI clade 10-10 medoid: GCF 001557875 1
- AAI clade 10-11 medoid: Yersinia alsatica GCA 902170305 1
- AAI clade 10-12 medoid: Photobacterium gaetbulicola Gung47 GCA 000940995 1
- AAI clade 10-13 medoid: GCA 002434205 1
- AAI clade 10-14 medoid: Rahnella variigena GCA 003602185 1
- AAI clade 10-15 medoid: Proteus alimentorum GCA 002607735 1
- AAI clade 10-16 medoid: Rheinheimera pacifica GCA 900108485 1
- AAI clade 10-17 medoid: Gilliamella bombicola GCA 900094945 1
- AAI clade 10-18 medoid: Succinivibrio dextrinosolvens DSM 3072 GCA 900167015 1
- AAI clade 10-19 medoid: GCF 005237295 1
AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
AAI clade 12 medoid: GCA 016840965 1
AAI clade 13 medoid: GCA 017622235 1
AAI clade 14 medoid: GCA 904390925 1
AAI clade 15 medoid: GCA 002375985 1
AAI clade 16 medoid: GCA 003963015 1
AAI clade 17 medoid: GCA 001771585 1
AAI clade 18 medoid: GCF 018398895 1
AAI clade 19 medoid: GCA 001295775 1
AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
AAI clade 21 medoid: GCF 009363535 1
AAI clade 22 medoid: GCA 904374795 1
AAI clade 23 medoid: GCA 903955385 1
AAI clade 24 medoid: GCA 903887975 1
AAI clade 25 medoid: GCA 902602655 1
AAI clade 26 medoid: GCA 905235755 1
AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
AAI clade 28 medoid: GCA 903909555 1
AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
AAI clade 30 medoid: GCA 015061955 1
AAI clade 31 medoid: GCA 000421065 1
AAI clade 32 medoid: GCA 002438845 1
AAI clade 33 medoid: GCA 003602665 1
AAI clade 34 medoid: GCA 910585295 1
AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
AAI clade 36 medoid: GCA 017608235 1
AAI clade 37 medoid: GCF 004332155 1
AAI clade 38 medoid: GCA 009712635 1
AAI clade 39 medoid: GCA 903926605 1
AAI clade 40 medoid: GCA 017645955 1
AAI clade 41 medoid: GCA 016793015 1
AAI clade 42 medoid: GCA 900538305 1
AAI clade 43 medoid: GCA 001002765 1
AAI clade 44 medoid: GCA 902559935 1
AAI clade 45 medoid: GCA 011371455 1
AAI clade 46 medoid: GCA 000435515 1
AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
AAI clade 48 medoid: GCF 002835935 1
AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
AAI clade 50 medoid: GCA 002338255 1
AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
AAI clade 52 medoid: GCA 900167925 1
AAI clade 53 medoid: GCA 900550065 1
AAI clade 54 medoid: GCA 002314915 1
AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
AAI clade 56 medoid: GCA 005882335 1
AAI clade 57 medoid: GCA 011065225 1
AAI clade 58 medoid: GCA 016781775 1
AAI clade 59 medoid: GCA 002362595 1
AAI clade 60 medoid: GCA 016214555 1
AAI clade 61 medoid: GCF 014764505 1
AAI clade 62 medoid: GCA 902623215 1
AAI clade 63 medoid: GCA 003514205 1
AAI clade 64 medoid: GCF 009707955 1
AAI clade 65 medoid: GCF 000348745 1
AAI clade 66 medoid: GCA 900772425 1
AAI clade 67 medoid: GCF 003590645 1
AAI clade 68 medoid: GCF 902506105 1
AAI clade 69 medoid: GCF 013407275 1
AAI clade 70 medoid: GCA 015494795 1
AAI clade 71 medoid: GCA 016709995 1
AAI clade 72 medoid: GCA 002493965 1
AAI clade 73 medoid: GCA 009469665 1
AAI clade 74 medoid: GCA 001799635 1
AAI clade 75 medoid: GCA 016650235 1
AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
AAI clade 77 medoid: GCA 009903855 1
AAI clade 78 medoid: GCA 019204045 1
AAI clade 79 medoid: GCA 902783375 1
AAI clade 80 medoid: GCF 000350105 1
AAI clade 81 medoid: GCA 903901345 1
AAI clade 82 medoid: GCA 015075425 1
AAI clade 83 medoid: GCA 001508835 1
AAI clade 84 medoid: GCA 017746715 1
AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
AAI clade 86 medoid: GCA 017438285 1
AAI clade 87 medoid: GCA 002712945 1
AAI clade 88 medoid: GCF 002214625 1
AAI clade 89 medoid: GCA 902773215 1
AAI clade 90 medoid: GCA 002723385 1
AAI clade 91 medoid: GCA 019113455 1
AAI clade 92 medoid: GCA 016286935 1
AAI clade 93 medoid: GCA 003566775 1

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