AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Brucella daejeonensis GCA 014199265 1
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AAI clade 2
medoid: GCA 017448355 1
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AAI clade 3
medoid: GCA 017467885 1
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AAI clade 4
medoid: Pedobacter duraquae GCA 004362245 1
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AAI clade 5
medoid: Streptomyces angustmyceticus GCA 002154415 1
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AAI clade 6
medoid: Pseudomonas migulae GCA 024169545 1
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AAI clade 7
medoid: miga SS18A Bin 41 contigs
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AAI clade 8
medoid: Mucilaginibacter ginkgonis GCA 009754905 2
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AAI clade 9
medoid: GCA 900755995 1
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AAI clade 10
medoid: GCF 013113835 1
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AAI clade 10-1
medoid: Pectobacterium polonicum GCA 005497185 1
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AAI clade 10-2
medoid: Serratia liquefaciens ATCC 27592 GCA 000422085 1
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AAI clade 10-3
medoid: Enterobacter oligotrophicus GCA 009176645 1
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AAI clade 10-4
medoid: Vibrio rotiferianus CAIM 577 LMG 21460 GCA 002741985 1
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AAI clade 10-5
medoid: GCF 000217915 1
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AAI clade 10-6
medoid: Aeromonas veronii bv veronii GCA 018359905 1
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AAI clade 10-7
medoid: Pseudoalteromonas espejiana DSM 9414 GCA 002221525 1
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AAI clade 10-8
medoid: GCF 000210895 1
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AAI clade 10-9
medoid: Xenorhabdus griffiniae GCA 028598495 1
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AAI clade 10-10
medoid: GCF 001557875 1
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AAI clade 10-11
medoid: Yersinia alsatica GCA 902170305 1
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AAI clade 10-12
medoid: Photobacterium gaetbulicola Gung47 GCA 000940995 1
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AAI clade 10-13
medoid: GCA 002434205 1
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AAI clade 10-13-1
medoid: Pantoea vagans GCA 004792415 1
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AAI clade 10-13-2
medoid: Erwinia pyrifoliae DSM 12163 GCA 000026985 1
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AAI clade 10-13-3
medoid: Tatumella ptyseos ATCC 33301 GCA 000735525 1
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AAI clade 10-13-4
medoid: Erwinia persicina NBRC 102418 GCA 001571305 1
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AAI clade 10-13-5
medoid: GCF 000175935 2
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AAI clade 10-13-6
medoid: Winslowiella arboricola GCA 025527015 1
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AAI clade 10-13-7
medoid: Mixta gaviniae GCA 002953195 1
7 datasets: Mixta calida GCA 002095355 1 (AAI: 95.22%), Mixta gaviniae GCA 002953195 1 (AAI: 100.0%), Mixta tenebrionis GCA 006517625 1 (AAI: 91.88%), Mixta theicola GCA 002895925 1 (AAI: 89.45%), Pantoea alhagi GCA 002101395 1 (AAI: 89.24%), GCA 015655145 1 (AAI: 70.98%), and GCF 009914055 1 (AAI: 89.76%)
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AAI clade 10-13-8
medoid: GCF 016625195 1
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AAI clade 10-13-9
medoid: GCF 003937915 1
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AAI clade 10-13-10
medoid: Izhakiella australiensis GCA 002006995 1
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AAI clade 10-13-11
medoid: Rosenbergiella nectarea GCA 900111105 1
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AAI clade 10-13-12
medoid: Kalamiella piersonii GCA 003612015 1
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AAI clade 10-13-13
medoid: GCA 016642085 1
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AAI clade 10-13-14
medoid: GCF 000828515 1
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AAI clade 10-13-15
medoid: GCF 000971765 1
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AAI clade 10-13-16
medoid: GCF 002933315 1
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AAI clade 10-13-17
medoid: GCF 002933335 1
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AAI clade 10-13-18
medoid: GCF 009829985 1
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AAI clade 10-13-1
medoid: Pantoea vagans GCA 004792415 1
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AAI clade 10-14
medoid: Rahnella variigena GCA 003602185 1
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AAI clade 10-15
medoid: Proteus alimentorum GCA 002607735 1
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AAI clade 10-16
medoid: Rheinheimera pacifica GCA 900108485 1
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AAI clade 10-17
medoid: Gilliamella bombicola GCA 900094945 1
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AAI clade 10-18
medoid: Succinivibrio dextrinosolvens DSM 3072 GCA 900167015 1
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AAI clade 10-19
medoid: GCF 005237295 1
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AAI clade 10-1
medoid: Pectobacterium polonicum GCA 005497185 1
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AAI clade 11
medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
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AAI clade 12
medoid: GCA 016840965 1
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AAI clade 13
medoid: GCA 017622235 1
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AAI clade 14
medoid: GCA 904390925 1
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AAI clade 15
medoid: GCA 002375985 1
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AAI clade 16
medoid: GCA 003963015 1
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AAI clade 17
medoid: GCA 001771585 1
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AAI clade 18
medoid: GCF 018398895 1
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AAI clade 19
medoid: GCA 001295775 1
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AAI clade 20
medoid: Qipengyuania aquimaris GCA 009827445 1
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AAI clade 21
medoid: GCF 009363535 1
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AAI clade 22
medoid: GCA 904374795 1
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AAI clade 23
medoid: GCA 903955385 1
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AAI clade 24
medoid: GCA 903887975 1
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AAI clade 25
medoid: GCA 902602655 1
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AAI clade 26
medoid: GCA 905235755 1
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AAI clade 27
medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
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AAI clade 28
medoid: GCA 903909555 1
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AAI clade 29
medoid: Marinomonas aquimarina GCA 900089755 1
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AAI clade 30
medoid: GCA 015061955 1
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AAI clade 31
medoid: GCA 000421065 1
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AAI clade 32
medoid: GCA 002438845 1
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AAI clade 33
medoid: GCA 003602665 1
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AAI clade 34
medoid: GCA 910585295 1
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AAI clade 35
medoid: Nocardioides iriomotensis GCA 004168035 1
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AAI clade 36
medoid: GCA 017608235 1
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AAI clade 37
medoid: GCF 004332155 1
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AAI clade 38
medoid: GCA 009712635 1
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AAI clade 39
medoid: GCA 903926605 1
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AAI clade 40
medoid: GCA 017645955 1
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AAI clade 41
medoid: GCA 016793015 1
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AAI clade 42
medoid: GCA 900538305 1
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AAI clade 43
medoid: GCA 001002765 1
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AAI clade 44
medoid: GCA 902559935 1
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AAI clade 45
medoid: GCA 011371455 1
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AAI clade 46
medoid: GCA 000435515 1
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AAI clade 47
medoid: Anaerostipes butyraticus GCA 016586355 1
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AAI clade 48
medoid: GCF 002835935 1
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AAI clade 49
medoid: miga PS19A RaymondF 2016 P20E90 bin 24
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AAI clade 50
medoid: GCA 002338255 1
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AAI clade 51
medoid: Haloprofundus salinisoli GCA 020097815 1
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AAI clade 52
medoid: GCA 900167925 1
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AAI clade 53
medoid: GCA 900550065 1
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AAI clade 54
medoid: GCA 002314915 1
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AAI clade 55
medoid: Rhizorhabdus dicambivorans GCA 002355275 1
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AAI clade 56
medoid: GCA 005882335 1
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AAI clade 57
medoid: GCA 011065225 1
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AAI clade 58
medoid: GCA 016781775 1
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AAI clade 59
medoid: GCA 002362595 1
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AAI clade 60
medoid: GCA 016214555 1
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AAI clade 61
medoid: GCF 014764505 1
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AAI clade 62
medoid: GCA 902623215 1
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AAI clade 63
medoid: GCA 003514205 1
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AAI clade 64
medoid: GCF 009707955 1
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AAI clade 65
medoid: GCF 000348745 1
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AAI clade 66
medoid: GCA 900772425 1
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AAI clade 67
medoid: GCF 003590645 1
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AAI clade 68
medoid: GCF 902506105 1
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AAI clade 69
medoid: GCF 013407275 1
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AAI clade 70
medoid: GCA 015494795 1
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AAI clade 71
medoid: GCA 016709995 1
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AAI clade 72
medoid: GCA 002493965 1
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AAI clade 73
medoid: GCA 009469665 1
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AAI clade 74
medoid: GCA 001799635 1
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AAI clade 75
medoid: GCA 016650235 1
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AAI clade 76
medoid: Ochrovirga pacifica GCA 000220525 2
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AAI clade 77
medoid: GCA 009903855 1
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AAI clade 78
medoid: GCA 019204045 1
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AAI clade 79
medoid: GCA 902783375 1
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AAI clade 80
medoid: GCF 000350105 1
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AAI clade 81
medoid: GCA 903901345 1
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AAI clade 82
medoid: GCA 015075425 1
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AAI clade 83
medoid: GCA 001508835 1
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AAI clade 84
medoid: GCA 017746715 1
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AAI clade 85
medoid: Nocardioides plantarum GCA 006346395 1
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AAI clade 86
medoid: GCA 017438285 1
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AAI clade 87
medoid: GCA 002712945 1
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AAI clade 88
medoid: GCF 002214625 1
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AAI clade 89
medoid: GCA 902773215 1
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AAI clade 90
medoid: GCA 002723385 1
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AAI clade 91
medoid: GCA 019113455 1
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AAI clade 92
medoid: GCA 016286935 1
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AAI clade 93
medoid: GCA 003566775 1