AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Brucella daejeonensis GCA 014199265 1
    • AAI clade 1-1 medoid: Brucella intermedia GCA 900454225 1
    • AAI clade 1-2 medoid: GCA 009773055 1
    • AAI clade 1-3 medoid: GCF 013035315 1
    • AAI clade 1-4 medoid: Agrobacterium leguminum GCA 015704895 1
    • AAI clade 1-5 medoid: Azospirillum tabaci GCA 014596085 1
    • AAI clade 1-6 medoid: Bartonella kosoyi GCA 003606325 3
    • AAI clade 1-7 medoid: GCA 000985875 1
    • AAI clade 1-8 medoid: Rhodobaca bogoriensis DSM 18756 GCA 004366635 1
    • AAI clade 1-9 medoid: GCF 002153605 1
    • AAI clade 1-10 medoid: Aureimonas phyllosphaerae GCA 014196405 1
    • AAI clade 1-11 medoid: Gluconobacter oxydans GCA 001581045 1
    • AAI clade 1-12 medoid: Paracoccus fontiphilus GCA 017356265 1
    • AAI clade 1-13 medoid: Phyllobacterium myrsinacearum GCA 004217385 1
    • AAI clade 1-14 medoid: GCF 016817355 1
    • AAI clade 1-15 medoid: GCF 000813965 1
    • AAI clade 1-16 medoid: GCA 902624095 1
    • AAI clade 1-17 medoid: GCF 001999245 1
      • AAI clade 1-17-1 medoid: Rhodobium orientis GCA 016653375 1
      • AAI clade 1-17-2 medoid: Afifella marina DSM 2698 GCA 900102695 1
      • AAI clade 1-17-3 medoid: Rhodomicrobium vannielii ATCC 17100 GCA 016461745 1
      • AAI clade 1-17-4 medoid: Chelatococcus asaccharovorans GCA 018398275 1
      • AAI clade 1-17-5 medoid: Chthonobacter rhizosphaerae GCA 013839525 1
      • AAI clade 1-17-6 medoid: Pleomorphomonas carboxyditropha GCA 002770725 1
      • AAI clade 1-17-7 medoid: Pseudovibrio ascidiaceicola GCA 900114245 1
      • AAI clade 1-17-8 medoid: GCF 001999245 1
      • AAI clade 1-17-9 medoid: GCA 009026145 1
      • AAI clade 1-17-10 medoid: Pannonibacter indicus GCA 001418225 1
      • AAI clade 1-17-11 medoid: GCF 009789575 1
      • AAI clade 1-17-12 medoid: Acuticoccus sediminis GCA 003258595 1
      • AAI clade 1-17-13 medoid: GCF 000526315 1
      • AAI clade 1-17-14 medoid: Cohaesibacter marisflavi GCA 900115225 1
      • AAI clade 1-17-15 medoid: Stappia sediminis GCA 009826895 1
      • AAI clade 1-17-16 medoid: Prosthecodimorpha staleyi GCA 018729455 1
      • AAI clade 1-17-17 medoid: Roseibium polysiphoniae GCA 014842925 1
      • AAI clade 1-17-18 medoid: Kaistia granuli DSM 23481 GCA 000380505 1
      • AAI clade 1-17-19 medoid: GCA 001516065 1
      • AAI clade 1-17-20 medoid: Hyphomicrobium zavarzinii ATCC 27496 GCA 000383415 1
      • AAI clade 1-17-21 medoid: GCA 017307955 1
      • AAI clade 1-17-22 medoid: Rhodoligotrophos defluvii GCA 005281615 1
      • AAI clade 1-17-23 medoid: Tepidamorphus gemmatus GCA 004346195 1
      • AAI clade 1-17-24 medoid: Methyloceanibacter caenitepidi GCA 000828475 1
      • AAI clade 1-17-25 medoid: Stappia stellulata DSM 5886 GCA 000423705 1
      • AAI clade 1-17-26 medoid: GCA 002298965 1
      • AAI clade 1-17-27 medoid: GCA 003574785 1
      • AAI clade 1-17-28 medoid: GCA 002694595 1
      • AAI clade 1-17-29 medoid: GCA 016522385 1
      • AAI clade 1-17-30 medoid: GCA 016764535 1
      • AAI clade 1-17-31 medoid: GCF 000230975 2
    • AAI clade 1-18 medoid: GCF 001511835 1
    • AAI clade 1-19 medoid: GCF 000948415 1
    • AAI clade 1-20 medoid: Yoonia rosea GCA 900156505 1
    • AAI clade 1-21 medoid: Rhizobium binae GCA 017357225 1
    • AAI clade 1-22 medoid: GCF 002007205 1
    • AAI clade 1-23 medoid: GCA 017991675 1
    • AAI clade 1-24 medoid: Belnapia moabensis DSM 16746 GCA 000745835 1
    • AAI clade 1-25 medoid: GCF 014204545 1
    • AAI clade 1-26 medoid: GCA 018222605 1
    • AAI clade 1-27 medoid: Devosia salina GCA 019504385 1
    • AAI clade 1-28 medoid: Sulfitobacter dubius GCA 900113435 1
    • AAI clade 1-29 medoid: GCA 900472485 1
    • AAI clade 1-30 medoid: GCF 001713475 1
    • AAI clade 1-31 medoid: Reyranella soli GCA 007992495 1
    • AAI clade 1-32 medoid: GCF 900093605 1
    • AAI clade 1-33 medoid: GCA 015228975 1
    • AAI clade 1-34 medoid: GCA 001464425 1
    • AAI clade 1-35 medoid: GCA 902547925 1
    • AAI clade 1-36 medoid: GCA 902543145 1
    • AAI clade 1-37 medoid: GCA 017546885 1
    • AAI clade 1-38 medoid: miga PS19A ZeeviD 2015 PNP Main 103 megahit bin 23
    • AAI clade 1-39 medoid: GCA 903879805 1
    • AAI clade 1-40 medoid: GCA 902526865 1
    • AAI clade 1-41 medoid: GCA 902602135 1
  • AAI clade 2 medoid: GCA 017448355 1
  • AAI clade 3 medoid: GCA 017467885 1
  • AAI clade 4 medoid: Pedobacter duraquae GCA 004362245 1
  • AAI clade 5 medoid: Streptomyces angustmyceticus GCA 002154415 1
  • AAI clade 6 medoid: Pseudomonas migulae GCA 024169545 1
  • AAI clade 7 medoid: miga SS18A Bin 41 contigs
  • AAI clade 8 medoid: Mucilaginibacter ginkgonis GCA 009754905 2
  • AAI clade 9 medoid: GCA 900755995 1
  • AAI clade 10 medoid: GCF 013113835 1
  • AAI clade 11 medoid: Secundilactobacillus odoratitofui DSM 19909 JCM 15043 GCA 001434895 1
  • AAI clade 12 medoid: GCA 016840965 1
  • AAI clade 13 medoid: GCA 017622235 1
  • AAI clade 14 medoid: GCA 904390925 1
  • AAI clade 15 medoid: GCA 002375985 1
  • AAI clade 16 medoid: GCA 003963015 1
  • AAI clade 17 medoid: GCA 001771585 1
  • AAI clade 18 medoid: GCF 018398895 1
  • AAI clade 19 medoid: GCA 001295775 1
  • AAI clade 20 medoid: Qipengyuania aquimaris GCA 009827445 1
  • AAI clade 21 medoid: GCF 009363535 1
  • AAI clade 22 medoid: GCA 904374795 1
  • AAI clade 23 medoid: GCA 903955385 1
  • AAI clade 24 medoid: GCA 903887975 1
  • AAI clade 25 medoid: GCA 902602655 1
  • AAI clade 26 medoid: GCA 905235755 1
  • AAI clade 27 medoid: Anaerovorax odorimutans DSM 5092 GCA 000426305 1
  • AAI clade 28 medoid: GCA 903909555 1
  • AAI clade 29 medoid: Marinomonas aquimarina GCA 900089755 1
  • AAI clade 30 medoid: GCA 015061955 1
  • AAI clade 31 medoid: GCA 000421065 1
  • AAI clade 32 medoid: GCA 002438845 1
  • AAI clade 33 medoid: GCA 003602665 1
  • AAI clade 34 medoid: GCA 910585295 1
  • AAI clade 35 medoid: Nocardioides iriomotensis GCA 004168035 1
  • AAI clade 36 medoid: GCA 017608235 1
  • AAI clade 37 medoid: GCF 004332155 1
  • AAI clade 38 medoid: GCA 009712635 1
  • AAI clade 39 medoid: GCA 903926605 1
  • AAI clade 40 medoid: GCA 017645955 1
  • AAI clade 41 medoid: GCA 016793015 1
  • AAI clade 42 medoid: GCA 900538305 1
  • AAI clade 43 medoid: GCA 001002765 1
  • AAI clade 44 medoid: GCA 902559935 1
  • AAI clade 45 medoid: GCA 011371455 1
  • AAI clade 46 medoid: GCA 000435515 1
  • AAI clade 47 medoid: Anaerostipes butyraticus GCA 016586355 1
  • AAI clade 48 medoid: GCF 002835935 1
  • AAI clade 49 medoid: miga PS19A RaymondF 2016 P20E90 bin 24
  • AAI clade 50 medoid: GCA 002338255 1
  • AAI clade 51 medoid: Haloprofundus salinisoli GCA 020097815 1
  • AAI clade 52 medoid: GCA 900167925 1
  • AAI clade 53 medoid: GCA 900550065 1
  • AAI clade 54 medoid: GCA 002314915 1
  • AAI clade 55 medoid: Rhizorhabdus dicambivorans GCA 002355275 1
  • AAI clade 56 medoid: GCA 005882335 1
  • AAI clade 57 medoid: GCA 011065225 1
  • AAI clade 58 medoid: GCA 016781775 1
  • AAI clade 59 medoid: GCA 002362595 1
  • AAI clade 60 medoid: GCA 016214555 1
  • AAI clade 61 medoid: GCF 014764505 1
  • AAI clade 62 medoid: GCA 902623215 1
  • AAI clade 63 medoid: GCA 003514205 1
  • AAI clade 64 medoid: GCF 009707955 1
  • AAI clade 65 medoid: GCF 000348745 1
  • AAI clade 66 medoid: GCA 900772425 1
  • AAI clade 67 medoid: GCF 003590645 1
  • AAI clade 68 medoid: GCF 902506105 1
  • AAI clade 69 medoid: GCF 013407275 1
  • AAI clade 70 medoid: GCA 015494795 1
  • AAI clade 71 medoid: GCA 016709995 1
  • AAI clade 72 medoid: GCA 002493965 1
  • AAI clade 73 medoid: GCA 009469665 1
  • AAI clade 74 medoid: GCA 001799635 1
  • AAI clade 75 medoid: GCA 016650235 1
  • AAI clade 76 medoid: Ochrovirga pacifica GCA 000220525 2
  • AAI clade 77 medoid: GCA 009903855 1
  • AAI clade 78 medoid: GCA 019204045 1
  • AAI clade 79 medoid: GCA 902783375 1
  • AAI clade 80 medoid: GCF 000350105 1
  • AAI clade 81 medoid: GCA 903901345 1
  • AAI clade 82 medoid: GCA 015075425 1
  • AAI clade 83 medoid: GCA 001508835 1
  • AAI clade 84 medoid: GCA 017746715 1
  • AAI clade 85 medoid: Nocardioides plantarum GCA 006346395 1
  • AAI clade 86 medoid: GCA 017438285 1
  • AAI clade 87 medoid: GCA 002712945 1
  • AAI clade 88 medoid: GCF 002214625 1
  • AAI clade 89 medoid: GCA 902773215 1
  • AAI clade 90 medoid: GCA 002723385 1
  • AAI clade 91 medoid: GCA 019113455 1
  • AAI clade 92 medoid: GCA 016286935 1
  • AAI clade 93 medoid: GCA 003566775 1