AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: human MGYG000000946
  • AAI clade 2 medoid: human MGYG000000019
  • AAI clade 3 medoid: human MGYG000003370
  • AAI clade 4 medoid: 3300027323 37
  • AAI clade 5 medoid: human MGYG000004185
  • AAI clade 6 medoid: human MGYG000001010
  • AAI clade 7 medoid: wastewater GEMS 3300025861 51
  • AAI clade 8 medoid: human MGYG000002603
  • AAI clade 9 medoid: 3300024953 8
  • AAI clade 10 medoid: 3300017423 5
  • AAI clade 11 medoid: pig GCA 946405745 1
  • AAI clade 12 medoid: 3300006192 20
  • AAI clade 13 medoid: pig LW1 s150947 bin 23
  • AAI clade 14 medoid: dog Snoopy p1 metabat2 high PE 009
  • AAI clade 15 medoid: pig MGYG000302081
  • AAI clade 16 medoid: human MGYG000000545
  • AAI clade 17 medoid: human MGYG000003895
  • AAI clade 18 medoid: chicken MGYG000313561
  • AAI clade 19 medoid: 3300024912 1
  • AAI clade 20 medoid: human MGYG000002619
  • AAI clade 21 medoid: human MGYG000002428
  • AAI clade 22 medoid: 3300027805 13
  • AAI clade 23 medoid: chicken MGYG000314833
    • AAI clade 23-1 medoid: chicken MGYG000315809
    • AAI clade 23-2 medoid: human MGYG000004473
    • AAI clade 23-3 medoid: 3300020385 31
    • AAI clade 23-4 medoid: wastewater ye ASMAG410
    • AAI clade 23-5 medoid: human MGYG000000315
    • AAI clade 23-6 medoid: chicken MGYG000314833
    • AAI clade 23-7 medoid: chicken MGYG000308813
    • AAI clade 23-8 medoid: chicken MGYG000320709
    • AAI clade 23-9 medoid: pig MGYG000302246
    • AAI clade 23-10 medoid: human MGYG000000544
    • AAI clade 23-11 medoid: pig F5138 bin 12
    • AAI clade 23-12 medoid: human MGYG000000503
    • AAI clade 23-13 medoid: human MGYG000000493
    • AAI clade 23-14 medoid: human MGYG000002236
    • AAI clade 23-15 medoid: pig F4945 bin 13
    • AAI clade 23-16 medoid: human MGYG000004420
    • AAI clade 23-17 medoid: chicken GCA 019116325 1
    • AAI clade 23-18 medoid: 3300012044 8
    • AAI clade 23-19 medoid: pig F5372 bin 17
    • AAI clade 23-20 medoid: wastewater ye ASMAG1496
    • AAI clade 23-21 medoid: 3300023174 51
      • AAI clade 23-21-1 medoid: 3300020440 31
        2 datasets: 3300020440 24 (AAI: 68.23%) and 3300020440 31 (AAI: 100.0%)
      • AAI clade 23-21-2 medoid: 3300023174 51
      • AAI clade 23-21-3 medoid: 3300025606 5
      • AAI clade 23-21-4 medoid: 3300027763 34
      • AAI clade 23-21-5 medoid: 3300027806 37
    • AAI clade 23-22 medoid: chicken MGYG000315705
    • AAI clade 23-23 medoid: pig W5021 bin 15
    • AAI clade 23-24 medoid: human MGYG000000408
    • AAI clade 23-25 medoid: human MGYG000004416
  • AAI clade 24 medoid: wastewater GEMS 3300027794 31
  • AAI clade 25 medoid: human MGYG000004406
  • AAI clade 26 medoid: pig MGYG000301788
  • AAI clade 27 medoid: 3300027834 52
  • AAI clade 28 medoid: 3300020389 13
  • AAI clade 29 medoid: 3300027835 270
  • AAI clade 30 medoid: 3300013004 97
  • AAI clade 31 medoid: 3300025065 6
  • AAI clade 32 medoid: human MGYG000004800
  • AAI clade 33 medoid: ruminant GCA 015060255 1
  • AAI clade 34 medoid: chicken GCA 019115885 1
  • AAI clade 35 medoid: pig SAMEA3663026 metabat2 high PE 017
  • AAI clade 36 medoid: human MGYG000000998
  • AAI clade 37 medoid: 3300012919 27
  • AAI clade 38 medoid: 3300027851 42
  • AAI clade 39 medoid: wastewater ye ASMAG566